More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_0918 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_0918  carbamoyl-phosphate synthase, small subunit  100 
 
 
403 aa  832    Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_010816  BLD_0084  carbamoyl phosphate synthase small subunit  76.9 
 
 
407 aa  650    Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_17990  carbamoyl-phosphate synthase small subunit  66.15 
 
 
420 aa  528  1e-149  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1711  carbamoyl-phosphate synthase, small subunit  66.93 
 
 
413 aa  526  1e-148  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0172822  n/a   
 
 
-
 
NC_013174  Jden_1322  carbamoyl-phosphate synthase, small subunit  64.3 
 
 
414 aa  518  1e-146  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.125881 
 
 
-
 
NC_012669  Bcav_2037  carbamoyl-phosphate synthase, small subunit  64.77 
 
 
405 aa  496  1e-139  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0185668 
 
 
-
 
NC_014151  Cfla_1845  carbamoyl-phosphate synthase, small subunit  63.64 
 
 
405 aa  489  1e-137  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.295776 
 
 
-
 
NC_011886  Achl_2000  carbamoyl phosphate synthase small subunit  59.95 
 
 
428 aa  481  1e-135  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000251671 
 
 
-
 
NC_008541  Arth_2263  carbamoyl phosphate synthase small subunit  59.13 
 
 
420 aa  483  1e-135  Arthrobacter sp. FB24  Bacteria  normal  0.181479  n/a   
 
 
-
 
NC_013131  Caci_2404  carbamoyl-phosphate synthase, small subunit  61.56 
 
 
392 aa  478  1e-134  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2807  Carbamoyl-phosphate synthase (glutamine- hydrolyzing)  60.1 
 
 
400 aa  469  1.0000000000000001e-131  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3103  carbamoyl-phosphate synthase, small subunit  59.9 
 
 
397 aa  458  9.999999999999999e-129  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.450122  normal 
 
 
-
 
NC_013510  Tcur_3013  carbamoyl-phosphate synthase, small subunit  59.84 
 
 
377 aa  457  1e-127  Thermomonospora curvata DSM 43183  Bacteria  normal  0.225095  n/a   
 
 
-
 
NC_008578  Acel_1299  carbamoyl phosphate synthase small subunit  60.37 
 
 
395 aa  457  1e-127  Acidothermus cellulolyticus 11B  Bacteria  normal  0.161991  hitchhiker  0.00596115 
 
 
-
 
NC_014165  Tbis_1354  carbamoyl-phosphate synthase small subunit  58.22 
 
 
372 aa  452  1.0000000000000001e-126  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0370749 
 
 
-
 
NC_009664  Krad_3002  carbamoyl phosphate synthase small subunit  59.07 
 
 
397 aa  448  1e-125  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.541041 
 
 
-
 
NC_008699  Noca_2430  carbamoyl phosphate synthase small subunit  59.22 
 
 
378 aa  449  1e-125  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_12590  carbamoyl-phosphate synthase small subunit  56.48 
 
 
394 aa  443  1e-123  Micrococcus luteus NCTC 2665  Bacteria  normal  0.188848  n/a   
 
 
-
 
NC_007333  Tfu_1056  carbamoyl-phosphate synthase small subunit  58.79 
 
 
416 aa  442  1e-123  Thermobifida fusca YX  Bacteria  normal  0.964387  n/a   
 
 
-
 
NC_013169  Ksed_12680  carbamoyl-phosphate synthase small subunit  57.97 
 
 
423 aa  441  1e-123  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.20639  normal  0.0925455 
 
 
-
 
NC_013172  Bfae_14760  carbamoyl-phosphate synthase small subunit  56.81 
 
 
402 aa  441  9.999999999999999e-123  Brachybacterium faecium DSM 4810  Bacteria  normal  0.865636  n/a   
 
 
-
 
NC_013235  Namu_4276  carbamoyl-phosphate synthase, small subunit  56.82 
 
 
404 aa  435  1e-121  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.381159 
 
 
-
 
NC_014158  Tpau_2582  carbamoyl-phosphate synthase, small subunit  58.25 
 
 
378 aa  437  1e-121  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.659057  n/a   
 
 
-
 
NC_009921  Franean1_1709  carbamoyl phosphate synthase small subunit  55.81 
 
 
397 aa  432  1e-120  Frankia sp. EAN1pec  Bacteria  normal  0.0706412  normal  0.0202078 
 
 
-
 
NC_013757  Gobs_3133  carbamoyl-phosphate synthase, small subunit  56.22 
 
 
388 aa  431  1e-119  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.266223  n/a   
 
 
-
 
NC_009565  TBFG_11412  carbamoyl phosphate synthase small subunit  57.47 
 
 
376 aa  427  1e-118  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00978215  normal  0.266084 
 
 
-
 
NC_007777  Francci3_3199  carbamoyl phosphate synthase small subunit  54.17 
 
 
421 aa  423  1e-117  Frankia sp. CcI3  Bacteria  decreased coverage  0.00261776  normal 
 
 
-
 
NC_009380  Strop_1855  carbamoyl-phosphate synthase, small subunit  56.25 
 
 
386 aa  422  1e-117  Salinispora tropica CNB-440  Bacteria  normal  0.459247  normal 
 
 
-
 
NC_009077  Mjls_2407  carbamoyl phosphate synthase small subunit  55.84 
 
 
387 aa  422  1e-117  Mycobacterium sp. JLS  Bacteria  normal  0.263156  normal 
 
 
-
 
NC_009953  Sare_1848  carbamoyl-phosphate synthase, small subunit  55.5 
 
 
386 aa  422  1e-117  Salinispora arenicola CNS-205  Bacteria  normal  0.293096  normal 
 
 
-
 
NC_008146  Mmcs_2366  carbamoyl phosphate synthase small subunit  55.84 
 
 
387 aa  424  1e-117  Mycobacterium sp. MCS  Bacteria  normal  0.122091  n/a   
 
 
-
 
NC_008705  Mkms_2413  carbamoyl phosphate synthase small subunit  55.84 
 
 
387 aa  424  1e-117  Mycobacterium sp. KMS  Bacteria  normal  normal  0.199018 
 
 
-
 
NC_013441  Gbro_2339  carbamoyl-phosphate synthase, small subunit  56.62 
 
 
378 aa  422  1e-117  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5242  carbamoyl-phosphate synthase, small subunit  54.57 
 
 
370 aa  416  9.999999999999999e-116  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3744  carbamoyl phosphate synthase small subunit  56.27 
 
 
387 aa  417  9.999999999999999e-116  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.36566  normal  0.0290185 
 
 
-
 
NC_013159  Svir_15580  carbamoyl-phosphate synthase small subunit  54.07 
 
 
378 aa  403  1e-111  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2663  carbamoyl phosphate synthase small subunit  54.66 
 
 
376 aa  404  1e-111  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3152  carbamoyl-phosphate synthase small subunit  52.04 
 
 
412 aa  398  1e-109  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.322749  hitchhiker  0.000625968 
 
 
-
 
NC_009767  Rcas_3359  carbamoyl-phosphate synthase, small subunit  50.75 
 
 
386 aa  348  1e-94  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.663891  normal 
 
 
-
 
NC_009523  RoseRS_4055  carbamoyl-phosphate synthase, small subunit  49.75 
 
 
386 aa  345  6e-94  Roseiflexus sp. RS-1  Bacteria  normal  0.103191  normal 
 
 
-
 
NC_007498  Pcar_1613  carbamoyl phosphate synthase small subunit  48.23 
 
 
376 aa  339  5.9999999999999996e-92  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0266912  n/a   
 
 
-
 
NC_011831  Cagg_2643  carbamoyl-phosphate synthase, small subunit  48.86 
 
 
374 aa  338  9.999999999999999e-92  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_2310  carbamoyl phosphate synthase small subunit  45.23 
 
 
384 aa  331  1e-89  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.162276 
 
 
-
 
NC_007604  Synpcc7942_2122  carbamoyl phosphate synthase small subunit  47.56 
 
 
391 aa  330  3e-89  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.618886 
 
 
-
 
NC_007512  Plut_0156  carbamoyl phosphate synthase small subunit  45.5 
 
 
369 aa  328  7e-89  Chlorobium luteolum DSM 273  Bacteria  normal  0.983052  normal  0.416855 
 
 
-
 
NC_009943  Dole_0120  carbamoyl-phosphate synthase, small subunit  47.22 
 
 
380 aa  328  1.0000000000000001e-88  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0009  carbamoyl phosphate synthase small subunit  44.75 
 
 
391 aa  327  2.0000000000000001e-88  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.35972  normal 
 
 
-
 
NC_009976  P9211_06931  carbamoyl phosphate synthase small subunit  43.51 
 
 
380 aa  327  2.0000000000000001e-88  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.0298336  normal  0.187512 
 
 
-
 
NC_009253  Dred_1683  carbamoyl-phosphate synthase, small subunit  46.02 
 
 
359 aa  327  3e-88  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000104913  n/a   
 
 
-
 
NC_010531  Pnec_0848  carbamoyl-phosphate synthase, small subunit  43.89 
 
 
398 aa  326  4.0000000000000003e-88  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.287672 
 
 
-
 
NC_011884  Cyan7425_1942  carbamoyl phosphate synthase small subunit  44.39 
 
 
389 aa  325  6e-88  Cyanothece sp. PCC 7425  Bacteria  normal  0.230816  normal  0.202912 
 
 
-
 
NC_011729  PCC7424_3196  carbamoyl phosphate synthase small subunit  45.94 
 
 
379 aa  324  1e-87  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0368063 
 
 
-
 
NC_008781  Pnap_1774  carbamoyl phosphate synthase small subunit  44.27 
 
 
393 aa  323  3e-87  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.0283036 
 
 
-
 
NC_010483  TRQ2_0379  carbamoyl phosphate synthase small subunit  44.9 
 
 
392 aa  323  4e-87  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0362  carbamoyl phosphate synthase small subunit  44.88 
 
 
392 aa  322  6e-87  Thermotoga petrophila RKU-1  Bacteria  normal  0.0108123  n/a   
 
 
-
 
NC_013385  Adeg_0372  carbamoyl-phosphate synthase, small subunit  46.61 
 
 
359 aa  320  3e-86  Ammonifex degensii KC4  Bacteria  normal  0.386907  n/a   
 
 
-
 
NC_010655  Amuc_1250  carbamoyl-phosphate synthase, small subunit  45.92 
 
 
372 aa  319  5e-86  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2349  carbamoyl phosphate synthase small subunit  44.44 
 
 
366 aa  319  6e-86  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1019  carbamoyl-phosphate synthase, small subunit  44.28 
 
 
397 aa  318  1e-85  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4410  carbamoyl phosphate synthase small subunit  45.73 
 
 
388 aa  318  1e-85  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.924948 
 
 
-
 
NC_010803  Clim_2299  carbamoyl phosphate synthase small subunit  44.04 
 
 
369 aa  318  1e-85  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.0000401664  n/a   
 
 
-
 
NC_013161  Cyan8802_0390  carbamoyl phosphate synthase small subunit  43.18 
 
 
380 aa  317  2e-85  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0381  carbamoyl phosphate synthase small subunit  43.18 
 
 
380 aa  317  2e-85  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_014148  Plim_2032  carbamoyl-phosphate synthase, small subunit  45.5 
 
 
383 aa  317  3e-85  Planctomyces limnophilus DSM 3776  Bacteria  unclonable  0.000000277554  n/a   
 
 
-
 
NC_007516  Syncc9605_1152  carbamoyl phosphate synthase small subunit  45.57 
 
 
386 aa  317  3e-85  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_2240  carbamoyl phosphate synthase small subunit  45.2 
 
 
373 aa  316  4e-85  Anaeromyxobacter sp. K  Bacteria  normal  0.513182  n/a   
 
 
-
 
NC_009675  Anae109_2191  carbamoyl phosphate synthase small subunit  45.15 
 
 
372 aa  316  5e-85  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.352304 
 
 
-
 
NC_008639  Cpha266_2459  carbamoyl phosphate synthase small subunit  44.82 
 
 
369 aa  316  5e-85  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.420642  n/a   
 
 
-
 
NC_007577  PMT9312_0848  carbamoyl phosphate synthase small subunit  45.32 
 
 
379 aa  315  9.999999999999999e-85  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2328  carbamoyl phosphate synthase small subunit  45.2 
 
 
373 aa  315  9.999999999999999e-85  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_2113  carbamoyl phosphate synthase small subunit  43.52 
 
 
371 aa  314  1.9999999999999998e-84  Prosthecochloris aestuarii DSM 271  Bacteria  unclonable  0.000000000982338  normal  0.988223 
 
 
-
 
NC_007760  Adeh_1620  carbamoyl phosphate synthase small subunit  45.15 
 
 
373 aa  314  1.9999999999999998e-84  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.394714  n/a   
 
 
-
 
NC_011060  Ppha_0218  carbamoyl phosphate synthase small subunit  43.78 
 
 
367 aa  314  1.9999999999999998e-84  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1771  carbamoyl phosphate synthase small subunit  46.17 
 
 
374 aa  313  2.9999999999999996e-84  Geobacter metallireducens GS-15  Bacteria  normal  0.0224697  normal  0.089739 
 
 
-
 
NC_014248  Aazo_2282  carbamoyl-phosphate synthase small subunit  45.38 
 
 
385 aa  313  2.9999999999999996e-84  'Nostoc azollae' 0708  Bacteria  normal  0.332421  n/a   
 
 
-
 
NC_008009  Acid345_2194  carbamoyl-phosphate synthase small subunit  46.27 
 
 
373 aa  313  2.9999999999999996e-84  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0938  carbamoyl-phosphate synthase small subunit  45.34 
 
 
385 aa  313  4.999999999999999e-84  Dechloromonas aromatica RCB  Bacteria  normal  0.742428  normal 
 
 
-
 
NC_013216  Dtox_2353  carbamoyl-phosphate synthase, small subunit  44.53 
 
 
358 aa  312  5.999999999999999e-84  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00528586  normal 
 
 
-
 
NC_013440  Hoch_3947  carbamoyl-phosphate synthase, small subunit  44.23 
 
 
408 aa  311  1e-83  Haliangium ochraceum DSM 14365  Bacteria  normal  0.201135  hitchhiker  0.00383855 
 
 
-
 
NC_008820  P9303_15771  carbamoyl phosphate synthase small subunit  43.99 
 
 
379 aa  311  1e-83  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU1273  carbamoyl phosphate synthase small subunit  46.55 
 
 
374 aa  310  2e-83  Geobacter sulfurreducens PCA  Bacteria  normal  0.0567002  n/a   
 
 
-
 
NC_008817  P9515_10341  carbamoyl phosphate synthase small subunit  45.43 
 
 
379 aa  311  2e-83  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_007335  PMN2A_0259  carbamoyl phosphate synthase small subunit  42.39 
 
 
384 aa  311  2e-83  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_09281  carbamoyl phosphate synthase small subunit  42.39 
 
 
384 aa  311  2e-83  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.87193  normal  0.0301636 
 
 
-
 
NC_008816  A9601_09091  carbamoyl phosphate synthase small subunit  44.27 
 
 
379 aa  311  2e-83  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.347132  n/a   
 
 
-
 
NC_008255  CHU_3134  carbamoyl phosphate synthase small subunit  43.86 
 
 
365 aa  310  2e-83  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00309954  normal  0.624164 
 
 
-
 
NC_009483  Gura_1858  carbamoyl phosphate synthase small subunit  45.04 
 
 
373 aa  311  2e-83  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_1307  carbamoyl phosphate synthase small subunit  43.91 
 
 
398 aa  310  2.9999999999999997e-83  Synechococcus sp. CC9902  Bacteria  normal  0.786161  n/a   
 
 
-
 
NC_009783  VIBHAR_00912  carbamoyl phosphate synthase small subunit  44.95 
 
 
416 aa  310  2.9999999999999997e-83  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_004479  carbamoyl-phosphate synthase small chain  44.95 
 
 
379 aa  309  5.9999999999999995e-83  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1898  carbamoyl phosphate synthase small subunit  45.41 
 
 
374 aa  309  5.9999999999999995e-83  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2310  carbamoyl phosphate synthase small subunit  45.41 
 
 
374 aa  308  8e-83  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008228  Patl_2215  carbamoyl-phosphate synthase, small subunit  43.88 
 
 
381 aa  308  9e-83  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.000311671  n/a   
 
 
-
 
NC_013730  Slin_5758  carbamoyl-phosphate synthase, small subunit  43.56 
 
 
367 aa  308  1.0000000000000001e-82  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2679  carbamoyl phosphate synthase small subunit  43.22 
 
 
401 aa  308  1.0000000000000001e-82  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1968  carbamoyl phosphate synthase small subunit  45.09 
 
 
379 aa  308  1.0000000000000001e-82  Vibrio cholerae O395  Bacteria  normal  0.837999  n/a   
 
 
-
 
NC_008340  Mlg_1982  carbamoyl-phosphate synthase small subunit  43.42 
 
 
386 aa  307  2.0000000000000002e-82  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.157941  normal  0.0125598 
 
 
-
 
NC_011901  Tgr7_0975  carbamoyl-phosphate synthase, small subunit  43.54 
 
 
379 aa  308  2.0000000000000002e-82  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2527  carbamoyl phosphate synthase small subunit  45.92 
 
 
373 aa  307  2.0000000000000002e-82  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0698  carbamoyl-phosphate synthase, small subunit  42.57 
 
 
377 aa  306  6e-82  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.110228 
 
 
-
 
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