More than 300 homologs were found in PanDaTox collection
for query gene Francci3_1680 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_1680  two component LuxR family transcriptional regulator  100 
 
 
229 aa  453  1e-127  Frankia sp. CcI3  Bacteria  normal  0.128873  normal  0.734397 
 
 
-
 
NC_009921  Franean1_2216  two component LuxR family transcriptional regulator  70.05 
 
 
211 aa  288  4e-77  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.00683516  normal  0.0356101 
 
 
-
 
NC_009664  Krad_1090  two component transcriptional regulator, LuxR family  41.04 
 
 
224 aa  126  2.0000000000000002e-28  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.00274111  normal 
 
 
-
 
NC_009953  Sare_3939  two component LuxR family transcriptional regulator  39.25 
 
 
229 aa  118  6e-26  Salinispora arenicola CNS-205  Bacteria  normal  0.203044  normal  0.164365 
 
 
-
 
NC_014151  Cfla_0049  two component transcriptional regulator, LuxR family  35.43 
 
 
233 aa  114  2.0000000000000002e-24  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0384611  normal  0.0476146 
 
 
-
 
NC_013441  Gbro_3724  response regulator receiver  36.41 
 
 
231 aa  99.4  5e-20  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1881  two component transcriptional regulator, LuxR family  33.17 
 
 
260 aa  95.5  5e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4229  two component LuxR family transcriptional regulator  37.78 
 
 
215 aa  90.5  2e-17  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00851836  normal 
 
 
-
 
NC_007974  Rmet_4235  two component LuxR family transcriptional regulator  37.78 
 
 
215 aa  90.5  2e-17  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3153  two component transcriptional regulator, LuxR family  30.84 
 
 
224 aa  89.7  3e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.620598 
 
 
-
 
NC_013235  Namu_4835  response regulator receiver protein  35.86 
 
 
212 aa  90.1  3e-17  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  33.18 
 
 
215 aa  87.8  1e-16  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  33.18 
 
 
215 aa  87  2e-16  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  33.18 
 
 
215 aa  87  2e-16  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  33.18 
 
 
215 aa  87  2e-16  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  33.18 
 
 
215 aa  87  2e-16  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  33.18 
 
 
215 aa  87.4  2e-16  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  33.18 
 
 
215 aa  87  2e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  32.72 
 
 
215 aa  87  2e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  32.72 
 
 
215 aa  86.3  3e-16  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  32.72 
 
 
215 aa  86.7  3e-16  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011758  Mchl_5446  two component transcriptional regulator, LuxR family  32.8 
 
 
218 aa  86.3  4e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.26634  normal 
 
 
-
 
NC_012912  Dd1591_3504  DNA-binding transcriptional activator UhpA  34.1 
 
 
196 aa  85.5  6e-16  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0027  DNA-binding transcriptional activator UhpA  32.16 
 
 
197 aa  84.7  0.000000000000001  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0796  two component LuxR family transcriptional regulator  28.5 
 
 
237 aa  84.7  0.000000000000001  Mycobacterium sp. JLS  Bacteria  normal  0.203345  normal 
 
 
-
 
NC_010553  BamMC406_6653  two component LuxR family transcriptional regulator  32.24 
 
 
238 aa  84  0.000000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.879715  hitchhiker  0.00000102566 
 
 
-
 
NC_007974  Rmet_4965  two component LuxR family transcriptional regulator  33.94 
 
 
214 aa  84  0.000000000000002  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.122556 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  31.14 
 
 
228 aa  83.6  0.000000000000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  33.65 
 
 
217 aa  83.6  0.000000000000003  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  33.01 
 
 
209 aa  83.2  0.000000000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  31.25 
 
 
261 aa  82.4  0.000000000000005  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3667  two component LuxR family transcriptional regulator  31.82 
 
 
215 aa  82.4  0.000000000000005  Ralstonia eutropha JMP134  Bacteria  normal  0.849529  n/a   
 
 
-
 
NC_014158  Tpau_0354  two component transcriptional regulator, LuxR family  33.33 
 
 
222 aa  82.4  0.000000000000006  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  29.7 
 
 
238 aa  82  0.000000000000006  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_013595  Sros_1936  response regulator receiver protein  31.47 
 
 
205 aa  82.4  0.000000000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  29.86 
 
 
221 aa  82  0.000000000000007  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  33.67 
 
 
219 aa  80.9  0.00000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  31.98 
 
 
225 aa  81.3  0.00000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013441  Gbro_4304  response regulator receiver  30.56 
 
 
216 aa  80.5  0.00000000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.894661  n/a   
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  33.67 
 
 
219 aa  80.9  0.00000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  29.7 
 
 
250 aa  80.9  0.00000000000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_013093  Amir_7055  two component transcriptional regulator, LuxR family  31.34 
 
 
219 aa  80.5  0.00000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0928  response regulator receiver protein  33.68 
 
 
207 aa  79.7  0.00000000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0707495  normal 
 
 
-
 
NC_009783  VIBHAR_02748  response regulator  28.37 
 
 
214 aa  80.1  0.00000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000091  transcriptional regulatory protein UhpA  32.18 
 
 
202 aa  80.1  0.00000000000003  Vibrio sp. Ex25  Bacteria  normal  0.136186  n/a   
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  31.88 
 
 
213 aa  79.7  0.00000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.624898 
 
 
-
 
NC_013159  Svir_22850  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  34.03 
 
 
239 aa  80.1  0.00000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.711047 
 
 
-
 
CP001509  ECD_03553  DNA-binding response regulator in two-component regulatory system wtih UhpB  34.1 
 
 
196 aa  79.3  0.00000000000004  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0034  two component transcriptional regulator, LuxR family  34.1 
 
 
196 aa  79.3  0.00000000000004  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0030  DNA-binding transcriptional activator UhpA  34.1 
 
 
196 aa  79.3  0.00000000000004  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_3071  two component transcriptional regulator, LuxR family  32.89 
 
 
232 aa  79.3  0.00000000000004  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A3882  DNA-binding transcriptional activator UhpA  34.1 
 
 
196 aa  79.3  0.00000000000004  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0454  two component LuxR family transcriptional regulator  34.31 
 
 
208 aa  79.3  0.00000000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.698939  hitchhiker  0.00367889 
 
 
-
 
NC_012892  B21_03495  hypothetical protein  34.1 
 
 
196 aa  79.3  0.00000000000004  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4178  DNA-binding transcriptional activator UhpA  34.1 
 
 
196 aa  79.3  0.00000000000004  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5099  DNA-binding transcriptional activator UhpA  34.1 
 
 
196 aa  79.3  0.00000000000004  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0828785 
 
 
-
 
NC_010682  Rpic_3417  two component transcriptional regulator, LuxR family  32.89 
 
 
232 aa  79.3  0.00000000000004  Ralstonia pickettii 12J  Bacteria  normal  0.901274  normal 
 
 
-
 
NC_010658  SbBS512_E4250  DNA-binding transcriptional activator UhpA  34.1 
 
 
196 aa  79.3  0.00000000000004  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C4121  DNA-binding transcriptional activator UhpA  34.1 
 
 
196 aa  79.3  0.00000000000004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.97066  normal 
 
 
-
 
NC_010498  EcSMS35_4034  DNA-binding transcriptional activator UhpA  34.1 
 
 
196 aa  79.3  0.00000000000004  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.383338 
 
 
-
 
NC_012853  Rleg_5633  two component transcriptional regulator, LuxR family  29.32 
 
 
203 aa  79.3  0.00000000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.603295  normal 
 
 
-
 
NC_010515  Bcenmc03_4225  two component LuxR family transcriptional regulator  30.7 
 
 
241 aa  79  0.00000000000006  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.107538  normal  0.322545 
 
 
-
 
NC_011094  SeSA_A4000  DNA-binding transcriptional activator UhpA  33.53 
 
 
196 aa  78.2  0.0000000000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.348805  normal 
 
 
-
 
NC_011205  SeD_A4179  DNA-binding transcriptional activator UhpA  33.53 
 
 
196 aa  78.2  0.0000000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_4282  two component transcriptional regulator, LuxR family  36.84 
 
 
197 aa  78.2  0.0000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.49385  normal  0.091376 
 
 
-
 
NC_014213  Mesil_3486  hypothetical protein  31.77 
 
 
206 aa  78.2  0.0000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4016  DNA-binding transcriptional activator UhpA  33.53 
 
 
196 aa  78.2  0.0000000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  29.68 
 
 
228 aa  78.2  0.0000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal 
 
 
-
 
NC_009338  Mflv_3579  two component LuxR family transcriptional regulator  30.94 
 
 
217 aa  77.8  0.0000000000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.393396  normal  0.0540104 
 
 
-
 
NC_013739  Cwoe_2525  two component transcriptional regulator, LuxR family  33.5 
 
 
215 aa  77.8  0.0000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  31.48 
 
 
217 aa  77.8  0.0000000000001  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4071  DNA-binding transcriptional activator UhpA  33.53 
 
 
196 aa  78.2  0.0000000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  30.65 
 
 
217 aa  77.8  0.0000000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_013132  Cpin_2357  two component transcriptional regulator, LuxR family  27.75 
 
 
234 aa  76.6  0.0000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1987  two component LuxR family transcriptional regulator  31.58 
 
 
215 aa  76.6  0.0000000000003  Methylobacillus flagellatus KT  Bacteria  normal  0.0949899  normal 
 
 
-
 
NC_008010  Dgeo_2486  two component LuxR family transcriptional regulator  30.93 
 
 
208 aa  76.6  0.0000000000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  29.8 
 
 
207 aa  76.6  0.0000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6596  two component LuxR family transcriptional regulator  29.26 
 
 
249 aa  76.6  0.0000000000003  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  30.24 
 
 
213 aa  76.3  0.0000000000004  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2141  response regulator  27.91 
 
 
214 aa  76.3  0.0000000000004  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.126922  n/a   
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  32.55 
 
 
209 aa  76.3  0.0000000000004  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0642  two component transcriptional regulator, LuxR family  30.69 
 
 
208 aa  75.9  0.0000000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008686  Pden_1784  two component LuxR family transcriptional regulator  29.44 
 
 
224 aa  75.9  0.0000000000005  Paracoccus denitrificans PD1222  Bacteria  hitchhiker  0.000422915  normal 
 
 
-
 
NC_013947  Snas_3811  two component transcriptional regulator, LuxR family  30.85 
 
 
206 aa  75.9  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00252848 
 
 
-
 
NC_009620  Smed_4344  two component LuxR family transcriptional regulator  27.32 
 
 
219 aa  75.5  0.0000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.218307 
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  31.31 
 
 
218 aa  75.5  0.0000000000006  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_013595  Sros_6211  response regulator receiver protein  31.03 
 
 
239 aa  75.5  0.0000000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.377169 
 
 
-
 
NC_008146  Mmcs_3350  two component LuxR family transcriptional regulator  27.88 
 
 
227 aa  75.5  0.0000000000007  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  26.67 
 
 
206 aa  75.5  0.0000000000007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal 
 
 
-
 
NC_008705  Mkms_3412  two component LuxR family transcriptional regulator  27.88 
 
 
227 aa  75.5  0.0000000000007  Mycobacterium sp. KMS  Bacteria  normal  0.386741  normal  0.724713 
 
 
-
 
NC_008726  Mvan_2836  two component LuxR family transcriptional regulator  31.48 
 
 
207 aa  75.5  0.0000000000007  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.644859  normal 
 
 
-
 
NC_009077  Mjls_3361  two component LuxR family transcriptional regulator  27.88 
 
 
227 aa  75.5  0.0000000000007  Mycobacterium sp. JLS  Bacteria  normal  0.295921  normal  0.602395 
 
 
-
 
NC_007498  Pcar_1400  two component signal transduction response regulator  29.59 
 
 
214 aa  75.1  0.0000000000008  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  32.24 
 
 
211 aa  75.1  0.0000000000008  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010465  YPK_0081  two component LuxR family transcriptional regulator  32.35 
 
 
196 aa  74.3  0.000000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  30.18 
 
 
232 aa  74.7  0.000000000001  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3511  two component LuxR family transcriptional regulator  30.65 
 
 
221 aa  74.7  0.000000000001  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0444635 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  29.91 
 
 
213 aa  75.1  0.000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009727  CBUD_0726  response regulator  30.05 
 
 
211 aa  74.7  0.000000000001  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2881  response regulator receiver  32.61 
 
 
220 aa  74.7  0.000000000001  Gordonia bronchialis DSM 43247  Bacteria  decreased coverage  0.00126066  n/a   
 
 
-
 
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