More than 300 homologs were found in PanDaTox collection
for query gene Rmet_4229 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007974  Rmet_4229  two component LuxR family transcriptional regulator  100 
 
 
215 aa  432  1e-120  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00851836  normal 
 
 
-
 
NC_007974  Rmet_4235  two component LuxR family transcriptional regulator  100 
 
 
215 aa  430  1e-120  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4965  two component LuxR family transcriptional regulator  42.16 
 
 
214 aa  139  1.9999999999999998e-32  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.122556 
 
 
-
 
NC_009708  YpsIP31758_2764  transcriptional regulator RcsB  38.05 
 
 
217 aa  134  8e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.408225  n/a   
 
 
-
 
NC_010465  YPK_2843  transcriptional regulator RcsB  38.05 
 
 
217 aa  134  8e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1307  transcriptional regulator RcsB  38.05 
 
 
217 aa  134  8e-31  Yersinia pestis Angola  Bacteria  normal  0.0162714  normal 
 
 
-
 
NC_009436  Ent638_2797  transcriptional regulator RcsB  37.07 
 
 
216 aa  131  7.999999999999999e-30  Enterobacter sp. 638  Bacteria  hitchhiker  0.000000283918  normal 
 
 
-
 
CP001637  EcDH1_1441  two component transcriptional regulator, LuxR family  37.07 
 
 
216 aa  130  2.0000000000000002e-29  Escherichia coli DH1  Bacteria  hitchhiker  0.0000000259515  n/a   
 
 
-
 
NC_010468  EcolC_1433  transcriptional regulator RcsB  37.07 
 
 
216 aa  130  2.0000000000000002e-29  Escherichia coli ATCC 8739  Bacteria  normal  0.0102563  hitchhiker  0.00285537 
 
 
-
 
NC_011205  SeD_A2614  transcriptional regulator RcsB  37.07 
 
 
216 aa  130  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.588596 
 
 
-
 
NC_011094  SeSA_A2496  transcriptional regulator RcsB  37.07 
 
 
216 aa  130  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.424983  normal 
 
 
-
 
NC_011149  SeAg_B2406  transcriptional regulator RcsB  37.07 
 
 
216 aa  130  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  decreased coverage  0.00000000625449  n/a   
 
 
-
 
NC_011083  SeHA_C2510  transcriptional regulator RcsB  37.07 
 
 
216 aa  130  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.731723  normal  0.0675268 
 
 
-
 
NC_010498  EcSMS35_2366  transcriptional regulator RcsB  37.07 
 
 
216 aa  130  2.0000000000000002e-29  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000282288  normal 
 
 
-
 
NC_011353  ECH74115_3357  transcriptional regulator RcsB  37.07 
 
 
216 aa  130  2.0000000000000002e-29  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000561339  normal 
 
 
-
 
NC_011080  SNSL254_A2455  transcriptional regulator RcsB  37.07 
 
 
216 aa  130  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0427332  normal  0.0831575 
 
 
-
 
NC_009832  Spro_3267  transcriptional regulator RcsB  36.59 
 
 
216 aa  130  2.0000000000000002e-29  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00059602  normal 
 
 
-
 
NC_009801  EcE24377A_2517  transcriptional regulator RcsB  37.07 
 
 
216 aa  130  2.0000000000000002e-29  Escherichia coli E24377A  Bacteria  hitchhiker  0.0000000600529  n/a   
 
 
-
 
NC_009800  EcHS_A2357  transcriptional regulator RcsB  37.07 
 
 
228 aa  129  3e-29  Escherichia coli HS  Bacteria  hitchhiker  0.00000000398144  n/a   
 
 
-
 
NC_010658  SbBS512_E0721  transcriptional regulator RcsB  37.07 
 
 
228 aa  129  3e-29  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000245188  n/a   
 
 
-
 
NC_007347  Reut_A1693  LuxR response regulator receiver  39.81 
 
 
214 aa  128  5.0000000000000004e-29  Ralstonia eutropha JMP134  Bacteria  normal  0.478316  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1630  DNA-binding response regulator  34.48 
 
 
220 aa  127  2.0000000000000002e-28  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0322132  n/a   
 
 
-
 
NC_012880  Dd703_1041  transcriptional regulator RcsB  35.05 
 
 
218 aa  126  2.0000000000000002e-28  Dickeya dadantii Ech703  Bacteria  normal  0.140172  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0161  LuxR family DNA-binding response regulator  34.48 
 
 
220 aa  126  3e-28  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3209  transcriptional regulator RcsB  35.27 
 
 
216 aa  126  3e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3017  transcriptional regulator RcsB  35.61 
 
 
216 aa  125  4.0000000000000003e-28  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1107  transcriptional regulator RcsB  35.27 
 
 
216 aa  125  4.0000000000000003e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0187  LuxR response regulator receiver  34.98 
 
 
220 aa  125  7e-28  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0142  DNA-binding response regulator  34.98 
 
 
220 aa  121  7e-27  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_16350  putative two-component response regulator  36.41 
 
 
213 aa  120  1.9999999999999998e-26  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1421  putative two-component response regulator  36.41 
 
 
213 aa  119  4.9999999999999996e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4224  two component LuxR family transcriptional regulator  33.17 
 
 
231 aa  116  1.9999999999999998e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.322534  normal  0.434129 
 
 
-
 
NC_011663  Sbal223_0289  two component transcriptional regulator, LuxR family  34.95 
 
 
212 aa  116  3e-25  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3986  two component LuxR family transcriptional regulator  35.61 
 
 
217 aa  115  3.9999999999999997e-25  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.039666 
 
 
-
 
NC_004347  SO_4444  capsular synthesis regulator component B, putative  33.5 
 
 
212 aa  114  1.0000000000000001e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007348  Reut_B3667  two component LuxR family transcriptional regulator  36.27 
 
 
215 aa  114  1.0000000000000001e-24  Ralstonia eutropha JMP134  Bacteria  normal  0.849529  n/a   
 
 
-
 
NC_007005  Psyr_1294  LuxR response regulator receiver  38.35 
 
 
220 aa  113  2.0000000000000002e-24  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.721447 
 
 
-
 
NC_009074  BURPS668_1618  DNA-binding response regulator  38.92 
 
 
210 aa  112  3e-24  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0879  DNA-binding response regulator  38.92 
 
 
210 aa  112  4.0000000000000004e-24  Burkholderia mallei ATCC 23344  Bacteria  normal  0.888299  n/a   
 
 
-
 
NC_009080  BMA10247_0685  capsular synthesis regulator component B  38.92 
 
 
210 aa  112  4.0000000000000004e-24  Burkholderia mallei NCTC 10247  Bacteria  normal  0.394747  n/a   
 
 
-
 
NC_007434  BURPS1710b_1797  DNA-binding response regulator  38.92 
 
 
210 aa  112  4.0000000000000004e-24  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0473  DNA-binding response regulator  38.92 
 
 
210 aa  112  4.0000000000000004e-24  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1403  DNA-binding response regulator  38.92 
 
 
210 aa  112  4.0000000000000004e-24  Burkholderia mallei SAVP1  Bacteria  normal  0.846273  n/a   
 
 
-
 
NC_007953  Bxe_C1157  two component LuxR family transcriptional regulator  34.31 
 
 
215 aa  112  4.0000000000000004e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.505737  normal 
 
 
-
 
NC_009076  BURPS1106A_1640  capsular synthesis regulator component B  38.92 
 
 
210 aa  112  4.0000000000000004e-24  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0841891  n/a   
 
 
-
 
NC_007651  BTH_I2674  DNA-binding response regulator  38.54 
 
 
210 aa  112  5e-24  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_11120  putative response regulator  32.2 
 
 
214 aa  111  6e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A0258  LuxR response regulator receiver  35.61 
 
 
230 aa  110  1.0000000000000001e-23  Burkholderia pseudomallei 668  Bacteria  normal  0.752946  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1634  DNA-binding response regulator  34.15 
 
 
230 aa  110  2.0000000000000002e-23  Burkholderia pseudomallei 1710b  Bacteria  normal  0.723228  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0170  capsular synthesis regulator component B  34.15 
 
 
230 aa  110  2.0000000000000002e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  0.443347  n/a   
 
 
-
 
NC_010002  Daci_3936  two component LuxR family transcriptional regulator  32.84 
 
 
231 aa  110  2.0000000000000002e-23  Delftia acidovorans SPH-1  Bacteria  normal  0.426907  normal  0.200888 
 
 
-
 
NC_007492  Pfl01_3041  two component LuxR family transcriptional regulator  34.13 
 
 
215 aa  109  3e-23  Pseudomonas fluorescens Pf0-1  Bacteria  decreased coverage  0.000032992  normal  0.146168 
 
 
-
 
NC_003295  RSc3078  response regulator transcription regulator protein  37 
 
 
222 aa  108  4.0000000000000004e-23  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0498276  normal 
 
 
-
 
NC_007951  Bxe_A0280  two component LuxR family transcriptional regulator  31.46 
 
 
229 aa  107  1e-22  Burkholderia xenovorans LB400  Bacteria  normal  hitchhiker  0.00188137 
 
 
-
 
NC_011071  Smal_0735  two component transcriptional regulator, LuxR family  37.86 
 
 
213 aa  107  2e-22  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3677  two component transcriptional regulator, LuxR family  31.46 
 
 
229 aa  106  3e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0102182  hitchhiker  0.0000000000674126 
 
 
-
 
NC_010682  Rpic_3595  two component transcriptional regulator, LuxR family  32.67 
 
 
215 aa  106  3e-22  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_3273  two component transcriptional regulator, LuxR family  32.67 
 
 
215 aa  106  3e-22  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA1034  DNA-binding response regulator  33.66 
 
 
221 aa  105  4e-22  Burkholderia mallei ATCC 23344  Bacteria  normal  0.315998  n/a   
 
 
-
 
NC_007434  BURPS1710b_2225  DNA-binding response regulator  33.66 
 
 
221 aa  105  4e-22  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2872  two component LuxR family transcriptional regulator  31.92 
 
 
235 aa  105  4e-22  Burkholderia phymatum STM815  Bacteria  normal  0.891055  hitchhiker  0.000000000201971 
 
 
-
 
NC_009074  BURPS668_2022  DNA-binding response regulator  33.66 
 
 
221 aa  105  4e-22  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2078  LuxR family DNA-binding response regulator  33.66 
 
 
221 aa  105  4e-22  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  34.42 
 
 
222 aa  105  7e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.280021 
 
 
-
 
NC_011071  Smal_0155  two component transcriptional regulator, LuxR family  30.81 
 
 
212 aa  104  1e-21  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc3388  two-component response regulator transcription regulator protein  32.04 
 
 
215 aa  103  2e-21  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0201761  normal 
 
 
-
 
NC_010515  Bcenmc03_4699  two component LuxR family transcriptional regulator  31.34 
 
 
246 aa  103  2e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.372391  hitchhiker  0.00465492 
 
 
-
 
NC_009512  Pput_3752  two component LuxR family transcriptional regulator  33.33 
 
 
215 aa  102  3e-21  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3357  two component transcriptional regulator, LuxR family  34.13 
 
 
222 aa  102  4e-21  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1484  DNA-binding response regulator, LuxR family  36.95 
 
 
208 aa  102  5e-21  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_3010  two component transcriptional regulator, LuxR family  34.65 
 
 
222 aa  102  5e-21  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4225  two component LuxR family transcriptional regulator  29.44 
 
 
241 aa  102  5e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.107538  normal  0.322545 
 
 
-
 
NC_010086  Bmul_3779  two component LuxR family transcriptional regulator  31.66 
 
 
234 aa  102  5e-21  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.0265405 
 
 
-
 
NC_009656  PSPA7_1021  putative response regulator  31.58 
 
 
214 aa  102  6e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3938  two component LuxR family transcriptional regulator  29.95 
 
 
218 aa  100  1e-20  Delftia acidovorans SPH-1  Bacteria  normal  0.189042  normal  0.262256 
 
 
-
 
NC_010622  Bphy_0355  two component LuxR family transcriptional regulator  33.99 
 
 
236 aa  101  1e-20  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0198  DNA-binding response regulator  34.63 
 
 
230 aa  100  1e-20  Burkholderia thailandensis E264  Bacteria  normal  0.292201  n/a   
 
 
-
 
NC_010623  Bphy_3459  two component LuxR family transcriptional regulator  32.71 
 
 
219 aa  100  2e-20  Burkholderia phymatum STM815  Bacteria  normal  0.141427  normal  0.865068 
 
 
-
 
NC_007951  Bxe_A4347  two component LuxR family transcriptional regulator  33.82 
 
 
218 aa  100  2e-20  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.705126 
 
 
-
 
NC_010552  BamMC406_3287  two component LuxR family transcriptional regulator  31.53 
 
 
223 aa  100  2e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.404787 
 
 
-
 
NC_010682  Rpic_3417  two component transcriptional regulator, LuxR family  36.92 
 
 
232 aa  99.4  4e-20  Ralstonia pickettii 12J  Bacteria  normal  0.901274  normal 
 
 
-
 
NC_011071  Smal_0283  two component transcriptional regulator, LuxR family  35.27 
 
 
208 aa  99  5e-20  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.393471  normal  0.0532877 
 
 
-
 
NC_007650  BTH_II0143  transcription regulator  32.87 
 
 
265 aa  98.2  8e-20  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4070  two component LuxR family transcriptional regulator  32.02 
 
 
229 aa  98.2  9e-20  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A0190  transcription regulator  31.94 
 
 
234 aa  97.8  1e-19  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp1621  capsular synthesis response regulator transcription regulator protein  35.44 
 
 
219 aa  97.4  1e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.848219 
 
 
-
 
NC_011353  ECH74115_0438  transcriptional regulatory protein UhpA  31.58 
 
 
209 aa  97.8  1e-19  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0374  two component transcriptional regulator, LuxR family  33.33 
 
 
218 aa  97.8  1e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2880  two component LuxR family transcriptional regulator  30.54 
 
 
224 aa  97.8  1e-19  Burkholderia sp. 383  Bacteria  normal  0.345086  normal 
 
 
-
 
NC_013173  Dbac_2295  two component transcriptional regulator, LuxR family  32.71 
 
 
222 aa  97.4  1e-19  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.031577  n/a   
 
 
-
 
NC_010553  BamMC406_6665  two component LuxR family transcriptional regulator  28.84 
 
 
225 aa  97.8  1e-19  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0397086  normal  0.0268041 
 
 
-
 
NC_012856  Rpic12D_3071  two component transcriptional regulator, LuxR family  37.5 
 
 
232 aa  97.8  1e-19  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4692  two component LuxR family transcriptional regulator  34.45 
 
 
223 aa  96.7  2e-19  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.00363591  hitchhiker  0.0000170982 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  32.08 
 
 
215 aa  97.1  2e-19  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  32.08 
 
 
215 aa  97.1  2e-19  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5217  two component LuxR family transcriptional regulator  30.54 
 
 
224 aa  97.4  2e-19  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2966  two component LuxR family transcriptional regulator  32.52 
 
 
218 aa  96.7  2e-19  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.288922 
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  32.08 
 
 
215 aa  97.1  2e-19  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  33.02 
 
 
219 aa  97.1  2e-19  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.92254 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  33.66 
 
 
217 aa  96.3  3e-19  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>