More than 300 homologs were found in PanDaTox collection
for query gene Acid345_0405 on replicon NC_008009
Organism: Candidatus Koribacter versatilis Ellin345



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008009  Acid345_0405  two component LuxR family transcriptional regulator  100 
 
 
218 aa  442  1e-123  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.135899 
 
 
-
 
NC_008009  Acid345_3765  two component LuxR family transcriptional regulator  41.74 
 
 
277 aa  166  2e-40  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.11 
 
 
216 aa  102  4e-21  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  31.1 
 
 
222 aa  99.8  3e-20  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0834  LuxR response regulator receiver  26.89 
 
 
221 aa  97.1  2e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.0179337 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  30.62 
 
 
213 aa  96.3  3e-19  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  29.03 
 
 
227 aa  93.2  2e-18  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  25.85 
 
 
208 aa  93.6  2e-18  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  29.73 
 
 
218 aa  89.7  3e-17  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  29.73 
 
 
218 aa  89.7  3e-17  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  32.34 
 
 
213 aa  88.6  7e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  28.5 
 
 
223 aa  88.2  8e-17  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_013595  Sros_1680  response regulator receiver protein  30.41 
 
 
197 aa  87.8  1e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.516841 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  27.31 
 
 
214 aa  87  2e-16  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  24.17 
 
 
216 aa  87  2e-16  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  31 
 
 
213 aa  87.4  2e-16  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1708  two component LuxR family transcriptional regulator  28.99 
 
 
221 aa  87  2e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.685529 
 
 
-
 
NC_010002  Daci_1106  two component LuxR family transcriptional regulator  24.3 
 
 
223 aa  86.3  3e-16  Delftia acidovorans SPH-1  Bacteria  normal  0.584765  normal 
 
 
-
 
NC_007204  Psyc_0602  nitrate/nitrite response regulator  25 
 
 
219 aa  86.3  4e-16  Psychrobacter arcticus 273-4  Bacteria  normal  0.790372  normal 
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  27.75 
 
 
228 aa  85.9  4e-16  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  27.15 
 
 
235 aa  85.9  4e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  27.23 
 
 
222 aa  85.1  7e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  26.24 
 
 
219 aa  84.3  0.000000000000001  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  25.34 
 
 
236 aa  84.3  0.000000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_011992  Dtpsy_0424  two component transcriptional regulator, LuxR family  24.42 
 
 
223 aa  84.3  0.000000000000001  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  26.29 
 
 
215 aa  84.3  0.000000000000001  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_008782  Ajs_0433  two component LuxR family transcriptional regulator  24.42 
 
 
223 aa  84.3  0.000000000000001  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0027  DNA-binding transcriptional activator UhpA  32.16 
 
 
197 aa  84.3  0.000000000000001  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_0663  two component LuxR family transcriptional regulator  25.71 
 
 
219 aa  84.3  0.000000000000001  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  28.44 
 
 
226 aa  83.2  0.000000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013169  Ksed_23660  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  29.3 
 
 
222 aa  83.2  0.000000000000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4016  DNA-binding transcriptional activator UhpA  30.15 
 
 
196 aa  82.4  0.000000000000005  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  25.57 
 
 
242 aa  82.4  0.000000000000005  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_011083  SeHA_C4121  DNA-binding transcriptional activator UhpA  30.15 
 
 
196 aa  82.4  0.000000000000005  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.97066  normal 
 
 
-
 
NC_011080  SNSL254_A4071  DNA-binding transcriptional activator UhpA  30.15 
 
 
196 aa  82.4  0.000000000000005  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A4000  DNA-binding transcriptional activator UhpA  30.15 
 
 
196 aa  82.4  0.000000000000005  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.348805  normal 
 
 
-
 
NC_011205  SeD_A4179  DNA-binding transcriptional activator UhpA  30.15 
 
 
196 aa  82.4  0.000000000000005  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2464  two component LuxR family transcriptional regulator  25.23 
 
 
221 aa  82  0.000000000000007  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2087  two component LuxR family transcriptional regulator  26.39 
 
 
217 aa  81.6  0.000000000000007  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.332036 
 
 
-
 
NC_003296  RSp0980  nitrate/nitrite response regulator transcription regulator protein  28.11 
 
 
222 aa  81.6  0.000000000000008  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03553  DNA-binding response regulator in two-component regulatory system wtih UhpB  29.65 
 
 
196 aa  80.9  0.00000000000001  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0034  two component transcriptional regulator, LuxR family  29.65 
 
 
196 aa  80.9  0.00000000000001  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4178  DNA-binding transcriptional activator UhpA  29.65 
 
 
196 aa  80.9  0.00000000000001  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3882  DNA-binding transcriptional activator UhpA  29.65 
 
 
196 aa  80.9  0.00000000000001  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4034  DNA-binding transcriptional activator UhpA  29.65 
 
 
196 aa  80.9  0.00000000000001  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.383338 
 
 
-
 
NC_007412  Ava_C0116  two component LuxR family transcriptional regulator  26.05 
 
 
209 aa  81.3  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  24.88 
 
 
213 aa  81.3  0.00000000000001  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_011353  ECH74115_5099  DNA-binding transcriptional activator UhpA  29.65 
 
 
196 aa  80.9  0.00000000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0828785 
 
 
-
 
NC_012892  B21_03495  hypothetical protein  29.65 
 
 
196 aa  80.9  0.00000000000001  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  25.71 
 
 
219 aa  80.9  0.00000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.817999 
 
 
-
 
NC_010468  EcolC_0030  DNA-binding transcriptional activator UhpA  29.65 
 
 
196 aa  80.9  0.00000000000001  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4250  DNA-binding transcriptional activator UhpA  29.65 
 
 
196 aa  80.9  0.00000000000001  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0094  two component transcriptional regulator, LuxR family  27.31 
 
 
233 aa  80.9  0.00000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0277195 
 
 
-
 
NC_013530  Xcel_0190  two component transcriptional regulator, LuxR family  27.49 
 
 
219 aa  80.1  0.00000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.146862  n/a   
 
 
-
 
NC_008009  Acid345_0268  two component LuxR family transcriptional regulator  27.4 
 
 
217 aa  80.5  0.00000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.289536  normal 
 
 
-
 
NC_013757  Gobs_0707  two component transcriptional regulator, LuxR family  29.02 
 
 
270 aa  80.5  0.00000000000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  28.71 
 
 
224 aa  80.5  0.00000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  25.71 
 
 
219 aa  80.1  0.00000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  26.51 
 
 
217 aa  80.1  0.00000000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  25.68 
 
 
225 aa  80.1  0.00000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  27.19 
 
 
228 aa  79.3  0.00000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1446  two component transcriptional regulator, LuxR family  28.91 
 
 
223 aa  79.3  0.00000000000005  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0907  LuxR family two component transcriptional regulator  28.35 
 
 
197 aa  79  0.00000000000005  Thermobispora bispora DSM 43833  Bacteria  normal  0.365102  normal 
 
 
-
 
NC_013235  Namu_4738  two component transcriptional regulator, LuxR family  27.6 
 
 
233 aa  79  0.00000000000005  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  28.44 
 
 
230 aa  79  0.00000000000005  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_009439  Pmen_2668  two component LuxR family transcriptional regulator  27.04 
 
 
213 aa  78.6  0.00000000000007  Pseudomonas mendocina ymp  Bacteria  normal  0.18046  normal 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  30.1 
 
 
230 aa  78.2  0.0000000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  24.09 
 
 
234 aa  77.8  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_007794  Saro_1236  two component LuxR family transcriptional regulator  26.89 
 
 
208 aa  77.8  0.0000000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.23752  n/a   
 
 
-
 
NC_012912  Dd1591_3504  DNA-binding transcriptional activator UhpA  29.15 
 
 
196 aa  77.8  0.0000000000001  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  26.67 
 
 
218 aa  77.8  0.0000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5200  two component transcriptional regulator, LuxR family  29.65 
 
 
223 aa  77.8  0.0000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0156716  normal  0.415255 
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  23.85 
 
 
217 aa  77.8  0.0000000000001  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  23.85 
 
 
217 aa  77.8  0.0000000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  29.95 
 
 
204 aa  76.6  0.0000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0649288  normal  0.281143 
 
 
-
 
NC_013093  Amir_6525  two component transcriptional regulator, LuxR family  28.5 
 
 
216 aa  77.4  0.0000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_0528  two component LuxR family transcriptional regulator  30.15 
 
 
201 aa  77  0.0000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.653057  normal 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  23.91 
 
 
216 aa  76.6  0.0000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4606  two component transcriptional regulator, LuxR family  27.45 
 
 
207 aa  77.4  0.0000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal  0.296562 
 
 
-
 
NC_009620  Smed_4059  two component LuxR family transcriptional regulator  25.6 
 
 
212 aa  77  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.111025  normal 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  25.81 
 
 
218 aa  76.6  0.0000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  26.34 
 
 
206 aa  76.3  0.0000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal 
 
 
-
 
NC_014158  Tpau_0915  two component transcriptional regulator, LuxR family  28.38 
 
 
223 aa  76.3  0.0000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  25.11 
 
 
217 aa  76.3  0.0000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  27.31 
 
 
217 aa  76.6  0.0000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.482316 
 
 
-
 
NC_012669  Bcav_2710  two component transcriptional regulator, LuxR family  28.44 
 
 
230 aa  76.3  0.0000000000004  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.248821  normal  0.606697 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  25.81 
 
 
218 aa  76.3  0.0000000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  23.53 
 
 
222 aa  76.3  0.0000000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.764026 
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  29.52 
 
 
219 aa  76.3  0.0000000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.92254 
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  30.14 
 
 
213 aa  75.9  0.0000000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  25.81 
 
 
218 aa  76.3  0.0000000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6085  two component transcriptional regulator, LuxR family  25.68 
 
 
217 aa  75.9  0.0000000000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1940  LuxR response regulator receiver  27.1 
 
 
222 aa  75.5  0.0000000000006  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.95717  normal 
 
 
-
 
NC_010184  BcerKBAB4_0919  two component LuxR family transcriptional regulator  26.63 
 
 
214 aa  75.5  0.0000000000006  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  22.54 
 
 
238 aa  75.5  0.0000000000006  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  30.14 
 
 
217 aa  75.5  0.0000000000006  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  27.78 
 
 
230 aa  75.5  0.0000000000006  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4648  two component LuxR family transcriptional regulator  25.11 
 
 
219 aa  75.5  0.0000000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0156  two component transcriptional regulator, LuxR family  29.38 
 
 
230 aa  75.1  0.0000000000007  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.379873  n/a   
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  23.94 
 
 
220 aa  75.5  0.0000000000007  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
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