More than 300 homologs were found in PanDaTox collection
for query gene Aaci_0963 on replicon NC_013205
Organism: Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013205  Aaci_0963  pseudouridine synthase  100 
 
 
314 aa  627  1e-179  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.334173  n/a   
 
 
-
 
NC_012793  GWCH70_0522  pseudouridine synthase, RluA family  43.3 
 
 
304 aa  153  4e-36  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1383  pseudouridine synthase, RluA family  42.92 
 
 
299 aa  147  3e-34  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_1849  ribosomal large subunit pseudouridine synthase D  35.91 
 
 
316 aa  144  3e-33  Trichodesmium erythraeum IMS101  Bacteria  normal  0.97184  normal 
 
 
-
 
NC_006274  BCZK1186  ribosomal large subunit pseudouridine synthase D  40.76 
 
 
307 aa  143  4e-33  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1405  ribosomal large subunit pseudouridine synthase D  33.57 
 
 
307 aa  142  9e-33  Bacillus cereus ATCC 10987  Bacteria  normal  0.899251  n/a   
 
 
-
 
NC_005957  BT9727_1184  ribosomal large subunit pseudouridylate synthase D  40.76 
 
 
307 aa  142  9.999999999999999e-33  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_2414  pseudouridylate synthase, 23S RNA-specific  31.12 
 
 
290 aa  142  9.999999999999999e-33  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1382  ribosomal large subunit pseudouridine synthase, RluA family  40.28 
 
 
307 aa  140  1.9999999999999998e-32  Bacillus cereus AH820  Bacteria  n/a    normal  0.53631 
 
 
-
 
NC_005945  BAS1206  RNA pseudouridylate synthase  40.28 
 
 
307 aa  140  1.9999999999999998e-32  Bacillus anthracis str. Sterne  Bacteria  normal  0.575901  n/a   
 
 
-
 
NC_011658  BCAH187_A1446  ribosomal large subunit pseudouridine synthase, RluA family  41.23 
 
 
307 aa  141  1.9999999999999998e-32  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1304  ribosomal large subunit pseudouridine synthase  40.28 
 
 
307 aa  140  1.9999999999999998e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1014  RluA family pseudouridine synthase  39.63 
 
 
307 aa  140  3.9999999999999997e-32  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1208  RluA family pseudouridine synthase  33.22 
 
 
307 aa  139  7e-32  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4000  ribosomal large subunit pseudouridine synthase, RluA family  40.09 
 
 
307 aa  137  3.0000000000000003e-31  Bacillus cereus G9842  Bacteria  normal  normal  0.0122358 
 
 
-
 
NC_013203  Apar_0410  pseudouridine synthase  33.19 
 
 
246 aa  134  1.9999999999999998e-30  Atopobium parvulum DSM 20469  Bacteria  normal  0.503733  normal 
 
 
-
 
NC_013517  Sterm_3056  pseudouridine synthase, RluA family  29.69 
 
 
305 aa  134  1.9999999999999998e-30  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_08290  pseudouridine synthase, RluA family  36.04 
 
 
310 aa  133  3e-30  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2552  ribosomal large subunit pseudouridine synthase D  37.11 
 
 
313 aa  134  3e-30  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0920144  normal  0.0397584 
 
 
-
 
NC_011725  BCB4264_A1344  ribosomal large subunit pseudouridine synthase, RluA family  39.44 
 
 
307 aa  132  6e-30  Bacillus cereus B4264  Bacteria  normal  0.929825  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3719  RluA family pseudouridine synthase  35.74 
 
 
302 aa  131  1.0000000000000001e-29  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.00132143  n/a   
 
 
-
 
NC_011891  A2cp1_3526  pseudouridine synthase, RluA family  39.65 
 
 
287 aa  131  1.0000000000000001e-29  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.276057  n/a   
 
 
-
 
NC_011726  PCC8801_0749  pseudouridine synthase, RluA family  34.69 
 
 
318 aa  129  5.0000000000000004e-29  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011145  AnaeK_3462  pseudouridine synthase, RluA family  39.45 
 
 
287 aa  129  7.000000000000001e-29  Anaeromyxobacter sp. K  Bacteria  normal  0.16381  n/a   
 
 
-
 
NC_013721  HMPREF0424_1115  pseudouridine synthase, RluA family  31.45 
 
 
321 aa  128  1.0000000000000001e-28  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.494763 
 
 
-
 
NC_008261  CPF_2104  RluA family pseudouridine synthase  34.65 
 
 
306 aa  128  1.0000000000000001e-28  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1628  ribosomal large subunit pseudouridine synthase D protein  38.6 
 
 
358 aa  127  2.0000000000000002e-28  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1515  pseudouridine synthase, RluA family  33.22 
 
 
306 aa  128  2.0000000000000002e-28  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0647442 
 
 
-
 
NC_006055  Mfl387  23S rRNA/tRNA pseudouridine synthase  29.77 
 
 
311 aa  127  2.0000000000000002e-28  Mesoplasma florum L1  Bacteria  normal  0.319286  n/a   
 
 
-
 
NC_013161  Cyan8802_0778  pseudouridine synthase, RluA family  34.69 
 
 
318 aa  127  2.0000000000000002e-28  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B1248  ribosomal large subunit pseudouridine synthase, RluA family  36.29 
 
 
302 aa  127  2.0000000000000002e-28  Bacillus cereus G9842  Bacteria  decreased coverage  0.000362529  normal 
 
 
-
 
NC_008262  CPR_1818  pseudouridine synthase  34.21 
 
 
306 aa  127  2.0000000000000002e-28  Clostridium perfringens SM101  Bacteria  normal  0.05074  n/a   
 
 
-
 
NC_012856  Rpic12D_1591  pseudouridine synthase, RluA family  37.39 
 
 
370 aa  127  3e-28  Ralstonia pickettii 12D  Bacteria  normal  0.150486  decreased coverage  0.00904495 
 
 
-
 
NC_010571  Oter_3012  RluA family pseudouridine synthase  35.98 
 
 
311 aa  127  3e-28  Opitutus terrae PB90-1  Bacteria  normal  0.17598  normal  0.601739 
 
 
-
 
NC_008527  LACR_1082  ribosomal large subunit pseudouridine synthase D  36.91 
 
 
301 aa  127  3e-28  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.463864  n/a   
 
 
-
 
NC_008786  Veis_0087  RluA family pseudouridine synthase  35.52 
 
 
344 aa  126  4.0000000000000003e-28  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3442  RluA family pseudouridine synthase  38.16 
 
 
295 aa  126  4.0000000000000003e-28  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.56048 
 
 
-
 
NC_009513  Lreu_0929  ribosomal large subunit pseudouridine synthase D  33.46 
 
 
303 aa  126  5e-28  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2924  ribosomal large subunit pseudouridine synthase D  34.77 
 
 
312 aa  126  5e-28  Anabaena variabilis ATCC 29413  Bacteria  normal  0.459608  normal  0.0830361 
 
 
-
 
NC_011725  BCB4264_A3993  ribosomal large subunit pseudouridine synthase, RluA family  36.44 
 
 
302 aa  126  6e-28  Bacillus cereus B4264  Bacteria  decreased coverage  0.000288046  n/a   
 
 
-
 
NC_006274  BCZK3651  pseudouridylate synthase (pseudouridine synthase)  36.02 
 
 
302 aa  124  1e-27  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000000169242  n/a   
 
 
-
 
NC_007404  Tbd_0810  ribosomal large subunit pseudouridine synthase D  37.34 
 
 
318 aa  125  1e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.043607  normal 
 
 
-
 
NC_014248  Aazo_3490  pseudouridine synthase, RluA family  33.89 
 
 
329 aa  124  1e-27  'Nostoc azollae' 0708  Bacteria  normal  0.788611  n/a   
 
 
-
 
NC_007530  GBAA_4031  ribosomal large subunit pseudouridine synthase  36.02 
 
 
302 aa  125  1e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00039208  n/a   
 
 
-
 
NC_013889  TK90_2034  pseudouridine synthase, RluA family  35.77 
 
 
319 aa  125  1e-27  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_3937  ribosomal large subunit pseudouridine synthase D  36.02 
 
 
302 aa  124  2e-27  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.000000762664  n/a   
 
 
-
 
NC_005945  BAS3743  RNA pseudouridylate synthase  36.02 
 
 
302 aa  124  2e-27  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00315275  n/a   
 
 
-
 
NC_005957  BT9727_3634  ribosomal large subunit pseudouridine synthase D  36.02 
 
 
302 aa  124  2e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0043574  n/a   
 
 
-
 
NC_013739  Cwoe_3518  pseudouridine synthase, RluA family  41.52 
 
 
299 aa  124  2e-27  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_0908  ribosomal large subunit pseudouridine synthase D  32.06 
 
 
303 aa  124  2e-27  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00261324  n/a   
 
 
-
 
NC_011773  BCAH820_3906  ribosomal large subunit pseudouridine synthase, RluA family  36.02 
 
 
302 aa  124  2e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000340417 
 
 
-
 
NC_008530  LGAS_1014  pseudouridylate synthase, 23S RNA-specific  34.68 
 
 
304 aa  124  2e-27  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000716198  normal 
 
 
-
 
NC_011658  BCAH187_A3944  ribosomal large subunit pseudouridine synthase, RluA family  36.02 
 
 
302 aa  124  2e-27  Bacillus cereus AH187  Bacteria  unclonable  0.00000000328194  n/a   
 
 
-
 
NC_002976  SERP0763  ribosomal large subunit pseudouridine synthase D  32.22 
 
 
305 aa  123  3e-27  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1813  pseudouridine synthase, RluA family  30.21 
 
 
303 aa  123  4e-27  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_02691  putative pseudouridylate synthase specific to ribosomal large subunit  31.05 
 
 
326 aa  123  4e-27  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.88343  normal 
 
 
-
 
NC_009253  Dred_1673  RluA family pseudouridine synthase  37.95 
 
 
306 aa  123  5e-27  Desulfotomaculum reducens MI-1  Bacteria  normal  0.529944  n/a   
 
 
-
 
NC_010682  Rpic_1919  pseudouridine synthase, RluA family  36.97 
 
 
370 aa  123  5e-27  Ralstonia pickettii 12J  Bacteria  normal  0.338974  normal  0.0110313 
 
 
-
 
NC_013522  Taci_0984  pseudouridine synthase, RluA family  33.45 
 
 
320 aa  123  5e-27  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.0148654  n/a   
 
 
-
 
NC_013385  Adeg_1604  pseudouridine synthase, RluA family  38.43 
 
 
331 aa  123  5e-27  Ammonifex degensii KC4  Bacteria  normal  0.357256  n/a   
 
 
-
 
NC_008532  STER_0554  ribosomal large subunit pseudouridine synthase D  37.84 
 
 
296 aa  122  5e-27  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0069072  n/a   
 
 
-
 
NC_007760  Adeh_3379  pseudouridine synthase, RluD  38.49 
 
 
300 aa  122  6e-27  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4022  pseudouridine synthase, RluA family  36.32 
 
 
334 aa  122  6e-27  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000767359  n/a   
 
 
-
 
NC_011757  Mchl_0968  pseudouridine synthase, RluA family  38.06 
 
 
343 aa  122  6e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.431214 
 
 
-
 
NC_010002  Daci_5026  RluA family pseudouridine synthase  35.37 
 
 
356 aa  122  6e-27  Delftia acidovorans SPH-1  Bacteria  normal  0.257508  normal 
 
 
-
 
NC_010172  Mext_1005  RluA family pseudouridine synthase  38.06 
 
 
343 aa  122  6e-27  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007633  MCAP_0395  ribosomal large subunit pseudouridine synthase A  31.28 
 
 
322 aa  122  7e-27  Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria  normal  0.134097  n/a   
 
 
-
 
NC_013411  GYMC61_1632  pseudouridine synthase, RluA family  38.53 
 
 
304 aa  122  7e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009135  MmarC5_0584  RluA family pseudouridine synthase  34.38 
 
 
298 aa  122  8e-27  Methanococcus maripaludis C5  Archaea  normal  0.460121  n/a   
 
 
-
 
NC_007335  PMN2A_1560  putative pseudouridylate synthase specific to ribosomal large subunit  30.72 
 
 
326 aa  122  9.999999999999999e-27  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1041  pseudouridine synthase, RluA family  37.61 
 
 
304 aa  122  9.999999999999999e-27  Geobacillus sp. WCH70  Bacteria  unclonable  0.0000000000866742  n/a   
 
 
-
 
NC_012034  Athe_1372  pseudouridine synthase, RluA family  32.04 
 
 
300 aa  121  9.999999999999999e-27  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0947  pseudouridine synthase, RluA family  39.36 
 
 
345 aa  121  9.999999999999999e-27  Methylobacterium populi BJ001  Bacteria  normal  normal  0.48756 
 
 
-
 
NC_010320  Teth514_1821  RluA family pseudouridine synthase  31.45 
 
 
305 aa  120  1.9999999999999998e-26  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2253  ribosomal large subunit pseudouridine synthase D  36.4 
 
 
391 aa  121  1.9999999999999998e-26  Burkholderia thailandensis E264  Bacteria  decreased coverage  0.00391915  n/a   
 
 
-
 
NC_010003  Pmob_0736  RluA family pseudouridine synthase  35.24 
 
 
319 aa  120  3e-26  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_1303  pseudouridine synthase, RluA family  41.12 
 
 
314 aa  120  3e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2314  pseudouridine synthase, RluD  37.2 
 
 
334 aa  120  3e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.651442  n/a   
 
 
-
 
NC_007947  Mfla_1612  ribosomal large subunit pseudouridine synthase D  32.9 
 
 
356 aa  120  3e-26  Methylobacillus flagellatus KT  Bacteria  normal  hitchhiker  0.000933226 
 
 
-
 
NC_012791  Vapar_2180  pseudouridine synthase, RluA family  37.59 
 
 
327 aa  120  3e-26  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1353  ribosomal large subunit pseudouridine synthase D  32.28 
 
 
403 aa  120  3e-26  Cupriavidus metallidurans CH34  Bacteria  normal  0.270637  normal  0.743014 
 
 
-
 
NC_011898  Ccel_0610  pseudouridine synthase, RluA family  31.3 
 
 
304 aa  120  3e-26  Clostridium cellulolyticum H10  Bacteria  normal  0.0358231  n/a   
 
 
-
 
NC_009634  Mevan_0337  RluA family pseudouridine synthase  27.15 
 
 
297 aa  120  3.9999999999999996e-26  Methanococcus vannielii SB  Archaea  normal  0.0186274  n/a   
 
 
-
 
NC_009632  SaurJH1_1281  RluA family pseudouridine synthase  37.27 
 
 
305 aa  120  3.9999999999999996e-26  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.71357  n/a   
 
 
-
 
NC_013216  Dtox_2363  pseudouridine synthase, RluA family  31.85 
 
 
305 aa  120  3.9999999999999996e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2615  ribosomal large subunit pseudouridine synthase D  37.55 
 
 
344 aa  120  3.9999999999999996e-26  Polaromonas sp. JS666  Bacteria  normal  0.0357699  normal  0.629555 
 
 
-
 
NC_007951  Bxe_A2346  ribosomal large subunit pseudouridine synthase D  38.1 
 
 
438 aa  120  3.9999999999999996e-26  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0455755 
 
 
-
 
NC_009487  SaurJH9_1256  RluA family pseudouridine synthase  37.27 
 
 
305 aa  120  3.9999999999999996e-26  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4642  pseudouridine synthase, RluA family  34.29 
 
 
313 aa  119  4.9999999999999996e-26  Cyanothece sp. PCC 7425  Bacteria  hitchhiker  0.0000189125  normal  0.973939 
 
 
-
 
NC_004116  SAG2067  ribosomal large subunit pseudouridine synthase D  33.45 
 
 
294 aa  119  4.9999999999999996e-26  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0254  RluA family pseudouridine synthase  38.36 
 
 
316 aa  119  4.9999999999999996e-26  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00128568  normal  0.0139126 
 
 
-
 
NC_009076  BURPS1106A_2205  RluA family pseudouridine synthase  36.44 
 
 
395 aa  119  4.9999999999999996e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1335  RluA family pseudouridine synthase  32.85 
 
 
327 aa  119  4.9999999999999996e-26  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00000257398  n/a   
 
 
-
 
NC_013411  GYMC61_1911  pseudouridine synthase, RluA family  37.95 
 
 
304 aa  119  4.9999999999999996e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008528  OEOE_1079  ribosomal large subunit pseudouridine synthase D  33.78 
 
 
304 aa  119  4.9999999999999996e-26  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1572  RluA family pseudouridine synthase  34.05 
 
 
420 aa  119  4.9999999999999996e-26  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.00305296  hitchhiker  0.00710721 
 
 
-
 
NC_006348  BMA1324  ribosomal large subunit pseudouridine synthase D  36.44 
 
 
395 aa  119  6e-26  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0224168  n/a   
 
 
-
 
NC_009080  BMA10247_1084  RluA family pseudouridine synthase  36.44 
 
 
389 aa  119  6e-26  Burkholderia mallei NCTC 10247  Bacteria  normal  0.346306  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1813  RluA family pseudouridine synthase  36.44 
 
 
389 aa  119  6e-26  Burkholderia mallei SAVP1  Bacteria  normal  0.587957  n/a   
 
 
-
 
NC_009831  Ssed_3499  lysozyme  38.63 
 
 
323 aa  119  6e-26  Shewanella sediminis HAW-EB3  Bacteria  normal  0.847735  normal  0.0395097 
 
 
-
 
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