Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_2104 |
Symbol | |
ID | 4203246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | - |
Start bp | 2336001 |
End bp | 2336921 |
Gene Length | 921 bp |
Protein Length | 306 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 638082969 |
Product | RluA family pseudouridine synthase |
Protein accession | YP_696533 |
Protein GI | 110801362 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTTAA GTAAAGAAGT AATAAAAATA ACTGAAGAAG AAAAAGGAAT AAGAGCAGAT AAATTTTTAG CTCTTAAAAT AGATGGAGTT TCAAGAAACT TTATTCAAGG GCTTTTTGAT GATGGAAAAA TTTTAATTAA TGGAAAAGCA GAAAAGGGAA AATATAAGCT TTCAGTTGGA GATTGCGTTG AGGTAGAAAT ACCAGAACCA GAGGAATTAA AAGTTGAAGC TGAGGATATC CCATTAAATA TAGTTTATGA AGATGAAGAT GTAATAGTAG TTAATAAACC AAAGGGAATG GTAGTTCATC CTGCACCGGG AAATTATACT GGAACTTTAG TTAATGCATT ATTACATCAT TGTGATGATT TATCAGGAAT AAACGGGGTT ATAAGACCTG GAATAGTACA CAGAATAGAT AAAGATACTT CTGGAATATT AGTTGTTGCA AAAAATGATA ATGCTCATCA AAAACTAGCA GAACAATTTA AAGATCATAG CATAAAGAGA GAATACTATG CTATTGTTGA GGGAAGATTT AAAAAAGAAG GTGGCACAAT TGATGCACCT TTAGGAAGAC ACCATAGAGA TAGATTAAAG TATGCTGTGG TTAAAGATGG AAAGAGAGCA GTTACTCATT ATGAAGTTCT TAAAGTATTT AATTCATGTT CCCTTGTTAA ATGTACTTTA GAAACAGGAA GAACACATCA GATAAGAGTT CATATGGCCT TTATAGGGCA TCCATTACTT GGAGATACTG TTTATGGCTT AAAGAAACAA AAGAAATTAA GTCAAGAGGG GCAAGTTCTT CATGCTAAAA CATTAGGATT TATTCATCCT ACTACTGGAG AATATGTTGA ATTTGACTCA GAATTGCCAG AGTACTTTGA AAAAATTGTA GAGAAATTAG GAGGGTGTTA G
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Protein sequence | MSLSKEVIKI TEEEKGIRAD KFLALKIDGV SRNFIQGLFD DGKILINGKA EKGKYKLSVG DCVEVEIPEP EELKVEAEDI PLNIVYEDED VIVVNKPKGM VVHPAPGNYT GTLVNALLHH CDDLSGINGV IRPGIVHRID KDTSGILVVA KNDNAHQKLA EQFKDHSIKR EYYAIVEGRF KKEGGTIDAP LGRHHRDRLK YAVVKDGKRA VTHYEVLKVF NSCSLVKCTL ETGRTHQIRV HMAFIGHPLL GDTVYGLKKQ KKLSQEGQVL HAKTLGFIHP TTGEYVEFDS ELPEYFEKIV EKLGGC
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