| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3012 |
|---|
| Symbol | |
|---|
| ID | 6204231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 3868509 |
|---|
| End bp | 3869444 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641692677 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_001819893 |
|---|
| Protein GI | 182414827 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.17598 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.601739 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCAC AAACCTACAC CGTTCCGGAC ACGATTCGCC ACGGCCGGGC CGACAAAGTG
CTGGCGGCGG GCGTGACCGA GCACAGCCGA GTGGCTCTGC AGCGGTCGTT CGACGCGGGA
CTGGTTACGC GCGGTGGCGT TCCGATCGGG CGCGACACCA CCGTGACGGC TGGCGACACG
ATCGAGTTTT CGTTTGCGGA GATTAAGCCG ACGGAGATCA AGGCCGTGGA CATTCCGTTG
ACCGTGCTGT TCGAGGACAA ACACATGCTC GCGGTGAACA AGGCCGCGGG CATGGTGGTG
CATCCGGGCG TGGCGACGAG CGAGGACACG CTGGTCCACG CGTTGCTGGC GCACTGCGCG
GGCAGCCTCA GCGGGATCGG CGGCGTCGAG CGGCCCGGCA TCGTGCACCG GCTCGACAAG
GAAACGACGG GCGTGATCGT CGTCGCCAAA ACCGACGCCG CGCACCGCGC GCTCGCCGAC
CAGTTTGCCA CGCGGACGCT GAAGAAGGAA TATGTGGCGT TGGTGGCGGG CGTGCCGCGG
CTGCTGAGCG GCTCGATCGA TCGCGCCATC GCGCGGCATC CGGTGCACCG GCATCGGATG
ACGGTGGGCG AGGGCGGCCG ACCGGCGCGG ACGGACTGGG AACTGGTCGA GGCTTTCGGC
GACATCGGCG CGCTGGTCCG CTGTCGGATT TTCACGGGCC GGACGCACCA GATTCGCGTG
CATCTGAAGT CGCTTGGGCA TCCGATTCTC GGTGACGCGC TGTACGGATG GAAACCGGAG
CCGCGACTGG CGACGCAGCC GGCGCGCGTG ATGCTGCACG CGGAACATCT GGTTCTGACG
CATCCGATCA GCGGCAAGGA GCTCGATCTG CGCGCGCCGT TGCCCAAGGA TTTCGTGGCC
ATGATCAAGG AGCTGCGGAG GTCCGCAGGA AGGTAG
|
|---|
| Protein sequence | MTPQTYTVPD TIRHGRADKV LAAGVTEHSR VALQRSFDAG LVTRGGVPIG RDTTVTAGDT
IEFSFAEIKP TEIKAVDIPL TVLFEDKHML AVNKAAGMVV HPGVATSEDT LVHALLAHCA
GSLSGIGGVE RPGIVHRLDK ETTGVIVVAK TDAAHRALAD QFATRTLKKE YVALVAGVPR
LLSGSIDRAI ARHPVHRHRM TVGEGGRPAR TDWELVEAFG DIGALVRCRI FTGRTHQIRV
HLKSLGHPIL GDALYGWKPE PRLATQPARV MLHAEHLVLT HPISGKELDL RAPLPKDFVA
MIKELRRSAG R
|
|---|
| |