| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1115 |
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| Symbol | |
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| ID | 8709547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1285010 |
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| End bp | 1285975 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483206 |
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| Product | pseudouridine synthase, RluA family |
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| Protein accession | YP_003374316 |
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| Protein GI | 283783562 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.494763 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGGATTCC TCTTTTCGGG CATGCCGATG AGTGATATTT GCTTTAAAGT TACAAGCCAA
TTTTCCGGCT GCAGATTTGA TGTTTGCTTA TCAAAACTAA TGGGAGTTTC GCGTGCAAGT
GCGATATCTC TTATTGAGCG TAACCAAGCG AAAATCTTAG GTAGAAAATC GCAAAAATCC
TCCATTTTGC AAGATGGCGA TACGATTGTT GTCGATCAAA AAGAAAGTGC AGAACAAAAA
GAAGAGCAAA ATAATGAATC TTCTGTATGT AATATTCCAA TTATTTACAA CGACGACGAT
GTTGTTGTAA TAGATAAGCC TGTTGGAGTT GCCTCTCACG CAGCAAAGGG ATGGAGTGGG
CCGACAGTTC CAGAATGCCT AGAAGCTGTT GGAATAGATA TAAAAACAAC GCTGTGCGAC
GAATCGCGCA AAGGAATCGT AAGCAGATTA GACGTTGGAA CAAGCGGATT AATGCTAGTT
TGTAAAACAG ATTTTGCTTA TGAAGTAATG AAAAATCAGT TTGCAAAGCA TATCGTTAAA
AAAACGTATC ATGCGCTTGT TCAAGGAGAT TTAGCGCAAG ATAAAGCTAC TATTGATGCT
CCTATAGGTC GCGCAAAAGT ATCTGATTTT CGTTTTACTA TTACTTCTGA CGGCAAGCCT
GCTGTTACGC ACTGGGATGT GCTTGAGCGT TTTAGTCAAG CAACGTTAGT AAGCGTTAAT
TTGGAAACTG GTCGTACACA TCAAATACGC GTCCATTTTT CGTCTATAGG TCACCCTTTG
GTTGGGGATT CAATGTATGG AGCGAACCCA GTTTTGGCTC AAAAACTTGG GTTGCAACGT
CAATGGTTGC ATTCTATGGA ACTTACTTTT ACACATCCTC GCACGGGTAA ATCAGTGACG
GTTAAGTCGC ATTATCCTCT TGATTTGCAA CACGCGTTAG AAGCTATGCG AGCATTATTA
AAGTAA
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| Protein sequence | MGFLFSGMPM SDICFKVTSQ FSGCRFDVCL SKLMGVSRAS AISLIERNQA KILGRKSQKS
SILQDGDTIV VDQKESAEQK EEQNNESSVC NIPIIYNDDD VVVIDKPVGV ASHAAKGWSG
PTVPECLEAV GIDIKTTLCD ESRKGIVSRL DVGTSGLMLV CKTDFAYEVM KNQFAKHIVK
KTYHALVQGD LAQDKATIDA PIGRAKVSDF RFTITSDGKP AVTHWDVLER FSQATLVSVN
LETGRTHQIR VHFSSIGHPL VGDSMYGANP VLAQKLGLQR QWLHSMELTF THPRTGKSVT
VKSHYPLDLQ HALEAMRALL K
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