| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1335 |
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| Symbol | |
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| ID | 4172799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1599127 |
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| End bp | 1600110 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638054342 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_660915 |
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| Protein GI | 109897660 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000257398 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCTACCA GCTATGAAAA AATACAACTA CAGGCCGTGG TGCCGCAAAC GTTATTAGGT
AAACGTTTGG ATCAAGCTTT GGCTGAAATG TTCCCTGATT ATTCGCGATC TCGTATAAAA
GATTGGATTT TGGCGGATCA AGTTGCCGTT GATGGTCAGA TAGTGAACAA GCCAAGAGAA
AAATTGCTTG GTGAAGAGTT AATTGAAATT GATGCCAGTA TTGAGATACA AGAGCGTCAC
AGCGCACAAG AAATTGAGCT AAACATTGTT TACGAAGATG AGCATATTTT AGTCATAAAC
AAACCAACCA ATTTGGTTGT TCATCCGGGG GCGGGCAATG CGAGTGGCAC TATTTTAAAT
GCATTGCTAA GCCACGTGCC TGAGATTGCC AGTGTGCCCC GCGCTGGTAT CGTCCATCGA
TTAGATAAAG ACACCACGGG TTTGATGGTG GTAGCCAAAA CGATACCAGC ACAAACACAT
TTAGTTGAAA AGCTGCAAGC GCGTGAAATC AGCCGCGAGT ATGAAGCTGT CGTATACGGT
AACTTGATTG CTGGTGGCAG TGTTGATGAG CCTATCGGTC GTCATCCGAC TAAGCGCACC
AGCATGGCAG TAGTGCAATC TGGTAAGCCA GCGTTAACCC ATTATCGGGT TAAACATAAG
TACCGGGCGC ATACGCATTT ACGCTTAAAA CTAGAATCGG GTCGTACCCA TCAAATACGC
GTGCACATGG CACATTTACG TCACCCTTTG GTGGGCGACC AAGCTTACGG TGGTCGTCCT
CGATTACCAA AAGCGGCAAG CGAATTGATG ATAGAAACGA TTCGTGGCTT TAAGCGCCAA
GCTTTACACG CCATCCAGTT AGAGCTTGAA CATCCAATCA CAGGAGAGTG GATGTCTTTT
CAAGCGCCGT TGCCCGACGA TTTTGTTAAC TTGTTGGACG TGTTAAAAGA AGACACGGCA
CAAAATCCGG ATGATCTTGT TTAA
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| Protein sequence | MSTSYEKIQL QAVVPQTLLG KRLDQALAEM FPDYSRSRIK DWILADQVAV DGQIVNKPRE
KLLGEELIEI DASIEIQERH SAQEIELNIV YEDEHILVIN KPTNLVVHPG AGNASGTILN
ALLSHVPEIA SVPRAGIVHR LDKDTTGLMV VAKTIPAQTH LVEKLQAREI SREYEAVVYG
NLIAGGSVDE PIGRHPTKRT SMAVVQSGKP ALTHYRVKHK YRAHTHLRLK LESGRTHQIR
VHMAHLRHPL VGDQAYGGRP RLPKAASELM IETIRGFKRQ ALHAIQLELE HPITGEWMSF
QAPLPDDFVN LLDVLKEDTA QNPDDLV
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