| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3499 |
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| Symbol | |
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| ID | 5612673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4264502 |
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| End bp | 4265473 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934451 |
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| Product | lysozyme |
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| Protein accession | YP_001475231 |
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| Protein GI | 157376631 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.847735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0395097 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAAG AGATTAATCT AAAAAGTGAG ATAACAGCAA CACAAACAGG TCAAAGATTG
GATCAAACTT TGGCCGATCT GTTCCCTGAT TACTCACGCA CGCGCATCAA AGAGTGGATC
CAAGCTGGTT GGGTTTACAT TGATGGCACC GTTTCTATCA AGCCGAGAGA GAAGGTGCTT
GAAGGGCAAG TAATACAAGT CGAAGCGACA TTAGTCGAAG AGACAAAAGC AAAAGCACAA
GCGATAGATT TAGATATCGT TTATGAAGAT GATCACATTC TTGTGATCAA TAAACAGGCT
GGACTCGTTG TTCATCCCGG TGCAGGTAAT AGTGATGGCA CTTTGATGAA TGCTTTGTTG
CATCATTGTC CAAATATCGA ACTTGTTCCG CGTGCGGGTA TCGTGCACCG TCTGGATAAG
GATACAACCG GACTTATGGT TGTTGCTAAA ACCGTTGAGG CTCAAACTCA TCTGGTTGCC
GCTCTTCAAG CTCGAGAGAT CACTCGTGAA TATGAAGCCA TAGTACAAGG CTCTCTCATC
TCCGGTGGTA CCGTCGATGA GCCCATCGAT CGTCATCCAA CCAAGCGTAC GCATATGGCT
GTGGTGCATA ATGGTAAGCC TGCGATGACT CATTACCGTG TCGCTGAAAA ATTTAGGGCT
CACACTCGAT TGAGGTTGCG CCTCGAGTCA GGCAGAACCC ATCAAATCCG CGTGCATATG
TCTCATATCG GGCATACCTT GGTCGGTGAC CCTGTGTACG GTGGCCGTCC CAGACCACCA
AAAGGCGTTT CGCCTGAGTT CTTTGAAATT TATATGGGCT TTAAGCGCCA GGCTTTACAT
GCAATCAGGC TCGAACTTGC ACATCCTTAT ACGTGCGAGA TTATGAGCTG GCAGGCACCC
GTGCCTGAAG ATATGGTGAT ATTGACTAAG GCGTTACGCC AAGACACGCT TGAAAATCCA
TCGATTGTTT AA
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| Protein sequence | MTQEINLKSE ITATQTGQRL DQTLADLFPD YSRTRIKEWI QAGWVYIDGT VSIKPREKVL
EGQVIQVEAT LVEETKAKAQ AIDLDIVYED DHILVINKQA GLVVHPGAGN SDGTLMNALL
HHCPNIELVP RAGIVHRLDK DTTGLMVVAK TVEAQTHLVA ALQAREITRE YEAIVQGSLI
SGGTVDEPID RHPTKRTHMA VVHNGKPAMT HYRVAEKFRA HTRLRLRLES GRTHQIRVHM
SHIGHTLVGD PVYGGRPRPP KGVSPEFFEI YMGFKRQALH AIRLELAHPY TCEIMSWQAP
VPEDMVILTK ALRQDTLENP SIV
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