| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_1353 |
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| Symbol | |
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| ID | 4038156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cupriavidus metallidurans CH34 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007973 |
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| Strand | + |
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| Start bp | 1461789 |
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| End bp | 1463000 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637976737 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_583505 |
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| Protein GI | 94310295 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.270637 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.743014 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATA GCGCCAAGCA TTATAGCCGA AGCCCCAAGC CCGAAACCGG GCCGGAGCGC
CACACCGAAT CCACCGCCGT AGCGGACGTC GATACGGAGG AGTTTGGCGA CCTCGGTGAG
TTCAACGACG ATGTGCCGGT CTCGCCGCCG GCCGCGTCGG ATTTCGTGCC ACTGTACATG
GAAGTCGATA GCGCGTCTCA CGGCGAGCGC CTCGACAAGC TGCTCGCGCG GCACTTCAGC
GAGTTTTCGC GTAGCCGTAT CCAGCAATGG ATCGAGGATG GCGCCGTAAG GGTCGATGGC
GAGCCAAGCC GTGCCAAGGC ATCGGTCCAG ATGGGCCAGA AGATCGAGGT CCAGCCGCAG
GCCGCCCCGG AGTCCATGGC ATTCACGGCG GAAGACGTGC CCCTCGACGT CGTGTACGAG
GATGATGCCA TGTTGGTCAT CAACAAGCCT GCCGGACTGG TCGTCCACCC CGCCGCCGGC
AACTGGAGCG GCACCGTGCT GAACGGGCTG CTGCATCGCG ACCCGTCTGC GGCAAGGCTG
CCCCGCGCGG GGATTGTCCA CCGGCTGGAC AAGGAAACCT CCGGCCTGAT GGTGGTGGCA
CGGACGCTGG TCGCCCAGAC GGATCTGGTG CGACAGCTCG CCGCGCGCAC GGTCAAGCGG
ACCTATCTCG CGCTGGTCTG GGGCGAGACC CCCGATGACG GCACGATCGA TGCACCGATC
GGCCGGGACC CTCGCGAGCG CACGCGCATG GCGATCGTGC ATACGAACAG CGGCAAACCG
TCGCGCACGC ACTTCGAGAC CCTTGGCACG GTGCCGCTGG GCCGGGGTAA GGTGTCGATG
GTGATGTGCC AGCTCGAGAC CGGTCGGACG CACCAGATCC GCGTGCATTT CGAGTCGATC
GGCCATCCGC TGGTGGGCGA TCCCGTCTAT CACAAGGCCA CGCAACGCGG GCAGCGCCCC
GCGATCCGTG TGCCGCTGCC TGTCCCGTTC ACGCGCCAGG CGCTCCATGC CTACCGGCTG
GGGCTCGTGC ATCCGGTCAC CGGCCGCAAG ATGTCGTGGG AAGCCGAGCC GCCTGAAGAC
CTCCAGGCCT TGATCGATGC CCTCGACTTC GAGGGGCATG CGCAGGACGA TGAAGAGGAA
GACGACTGGT ACGAAGGGGA CGACGATGAC CAAGTCGACC ACGACGACCA CGACGACCAT
GACGACGAAT GA
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| Protein sequence | MKNSAKHYSR SPKPETGPER HTESTAVADV DTEEFGDLGE FNDDVPVSPP AASDFVPLYM
EVDSASHGER LDKLLARHFS EFSRSRIQQW IEDGAVRVDG EPSRAKASVQ MGQKIEVQPQ
AAPESMAFTA EDVPLDVVYE DDAMLVINKP AGLVVHPAAG NWSGTVLNGL LHRDPSAARL
PRAGIVHRLD KETSGLMVVA RTLVAQTDLV RQLAARTVKR TYLALVWGET PDDGTIDAPI
GRDPRERTRM AIVHTNSGKP SRTHFETLGT VPLGRGKVSM VMCQLETGRT HQIRVHFESI
GHPLVGDPVY HKATQRGQRP AIRVPLPVPF TRQALHAYRL GLVHPVTGRK MSWEAEPPED
LQALIDALDF EGHAQDDEEE DDWYEGDDDD QVDHDDHDDH DDE
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