| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0410 |
|---|
| Symbol | |
|---|
| ID | 8413259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 473622 |
|---|
| End bp | 474362 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 645021978 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_003179432 |
|---|
| Protein GI | 257784215 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.503733 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACTC TTCAAACCAA CAGTAATCTT GAGTTTTTGT ATCAGGACGA TTATCTACTT
GCCGTAAATA AACCAGCGGG AATGATTGTT CACTCAGATG GCACTAATGA GCCCTCTTTA
ACCGATTTAG TTTGCGAGAA ACTCTGTGCA CTTGAGAGTT CAAACAAGAT AGATCTTTCT
CAGGTCCAAG CATTGAATCG TCTTGACAAG GAGACAACAG GAATTGTGCT CTTCTCGCTT
AAAAAAGAAA CGCAGCCACA GTTTGATCAA CTCATCGCCT CTAAAGAACT CTCCAAAGAG
TATTTGGCAG TTGTTAAAGG AGATTTTGGA TTAAATAAAC TGCTGATAGA TAAGGCAATT
GGAAAAGACC GACATGATGC TCAGAAGATG AGAATTTCCG ACACAGGAAA ACCCTCTCAA
ACGGAGGTAC GTCTCATTAA AGTTGCGTCA TCAGCGCAAG GCCAAATTCA AAGCTTGTTA
TTGGTCAATT TGCTGACAGG AAGAAAGCAT CAAATTAGAG TGCATCTCTC GTCACTTGGA
TTTCCTCTGG TGGGAGATGT GTTGTATGGA GGTATGTCTT CTCTGCAGCG TAAAACAAAA
AAGAAGCATA GGCCGCAGCC ATTAATGCTG CACGCATATA GAATTGGATT TATTCACCCA
GTCACGGGCG CAAAAATTGT GATTAAAACG GATATTCCAG AGCGATTTTC TAATTTTGGT
GTCCTTGAGA AGGACTTATA G
|
|---|
| Protein sequence | MDTLQTNSNL EFLYQDDYLL AVNKPAGMIV HSDGTNEPSL TDLVCEKLCA LESSNKIDLS
QVQALNRLDK ETTGIVLFSL KKETQPQFDQ LIASKELSKE YLAVVKGDFG LNKLLIDKAI
GKDRHDAQKM RISDTGKPSQ TEVRLIKVAS SAQGQIQSLL LVNLLTGRKH QIRVHLSSLG
FPLVGDVLYG GMSSLQRKTK KKHRPQPLML HAYRIGFIHP VTGAKIVIKT DIPERFSNFG
VLEKDL
|
|---|
| |