| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Adeg_1604 |
|---|
| Symbol | |
|---|
| ID | 8491599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ammonifex degensii KC4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013385 |
|---|
| Strand | - |
|---|
| Start bp | 1591185 |
|---|
| End bp | 1592180 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 646359597 |
|---|
| Product | pseudouridine synthase, RluA family |
|---|
| Protein accession | YP_003239549 |
|---|
| Protein GI | 260893452 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.357256 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTCTGG CTTGTCGTCT GCAGGTGGAG GAAGAAGAGG CGGGGGTCCG GCTGGACGTT
TACCTGGCCC GCAACCTTCC GGAGAACAGC CGCTCCTATC TCCAGCGTCT CATCAACGAA
GGATACGTTC AGGTAGGAGG AAGAAAGGTC AAGCCGAGCT ACAAGGTTAA GCCGGGGGAA
GAGATTCTGG TCTTCCTCCC TCCGGCCGAG ACCCTGGAGG TGGAGCCGGA GCCCATCCCC
TTGGAGATAA TCTACGAGGA CGAGGACTTG CTGGTGGTGA ACAAGCCCCG GGGGATGGTG
GTGCACCCGG GGGCGGGGCA CAAGCGGGGC ACCTTAGTAA ACGCCCTTCT TTACCACTGC
CGCAGCCTCT CCGGCATAAA CGGCGTCTTG CGCCCCGGGA TCGTACACCG CCTGGACAAA
GATACTTCCG GCCTCCTTAT GGTGGCCAAA AACGATGCGG CGCATCTTTC TTTATCGGCC
CAGCTCAAGG AGCGGCGAGT GCTAAAAGAG TACTGGGCTC TGGTCTACGG GGAGGTGAAG
CCGGCCCAGG GACGCATCGA GGCCCCCATC GGCCGCCATC CCCGTTACCG GCAGAAGATG
GCGGTGGTGG CCGGGGGGCG GCCGGCGGTC ACCCATTACG AAGTGGTAGA GTATTTCCCC
GGGTACACCC TCTTGAGGGT GCGGCCGGAG ACCGGGCGCA CGCACCAGAT AAGGGTGCAC
CTTCATTATT TGGGACACCC CATTGTGGGG GATCTGAAAT ACGGCCCGGC TCGCCCTCAT
CTGGGACTGG AAGGGCAGTT TCTTCACGCC GGGGTCCTGG GCTTCACCCA TCCCCGCACG
GGGGAGTTTT TGCGCTTCGA GGCTCCTCTC CCTCCGGAGC TAGAGCGGGT CTTAGCCGAG
CTTCGCGCGC GCCAGGCGGG TAGGCCTGGC TCCCAGCCTC TCCAGCAGGA AGAAGGTGTC
GCTGCGCAGC CCCCGTCGCA GCGCGGCCAG GGATAG
|
|---|
| Protein sequence | MILACRLQVE EEEAGVRLDV YLARNLPENS RSYLQRLINE GYVQVGGRKV KPSYKVKPGE
EILVFLPPAE TLEVEPEPIP LEIIYEDEDL LVVNKPRGMV VHPGAGHKRG TLVNALLYHC
RSLSGINGVL RPGIVHRLDK DTSGLLMVAK NDAAHLSLSA QLKERRVLKE YWALVYGEVK
PAQGRIEAPI GRHPRYRQKM AVVAGGRPAV THYEVVEYFP GYTLLRVRPE TGRTHQIRVH
LHYLGHPIVG DLKYGPARPH LGLEGQFLHA GVLGFTHPRT GEFLRFEAPL PPELERVLAE
LRARQAGRPG SQPLQQEEGV AAQPPSQRGQ G
|
|---|
| |