More than 300 homologs were found in PanDaTox collection
for query gene TK90_2083 on replicon NC_013889
Organism: Thioalkalivibrio sp. K90mix



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013889  TK90_2083  short-chain dehydrogenase/reductase SDR  100 
 
 
254 aa  509  1e-143  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.13135  normal 
 
 
-
 
NC_008789  Hhal_1323  short-chain dehydrogenase/reductase SDR  63.39 
 
 
254 aa  330  9e-90  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2493  short-chain dehydrogenase/reductase SDR  43.08 
 
 
253 aa  186  4e-46  Chelativorans sp. BNC1  Bacteria  normal  0.0816082  n/a   
 
 
-
 
NC_007794  Saro_0512  short-chain dehydrogenase/reductase SDR  41.8 
 
 
248 aa  162  6e-39  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2421  short-chain dehydrogenase/reductase SDR  39.36 
 
 
259 aa  161  8.000000000000001e-39  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0231267 
 
 
-
 
NC_007778  RPB_3027  Short-chain dehydrogenase/reductase  40.56 
 
 
259 aa  158  9e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.730472  normal 
 
 
-
 
NC_008146  Mmcs_2711  short-chain dehydrogenase/reductase SDR  40.24 
 
 
245 aa  157  2e-37  Mycobacterium sp. MCS  Bacteria  normal  0.561182  n/a   
 
 
-
 
NC_008705  Mkms_2755  short-chain dehydrogenase/reductase SDR  40.24 
 
 
245 aa  157  2e-37  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2741  short-chain dehydrogenase/reductase SDR  40.24 
 
 
245 aa  156  3e-37  Mycobacterium sp. JLS  Bacteria  normal  0.67028  normal  0.072064 
 
 
-
 
NC_009524  PsycPRwf_0909  short-chain dehydrogenase/reductase SDR  38.19 
 
 
244 aa  155  5.0000000000000005e-37  Psychrobacter sp. PRwf-1  Bacteria  normal  0.271894  normal 
 
 
-
 
NC_008726  Mvan_3000  short-chain dehydrogenase/reductase SDR  40.86 
 
 
248 aa  155  6e-37  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.767749  normal  0.280666 
 
 
-
 
NC_007511  Bcep18194_B1012  Short-chain dehydrogenase/reductase SDR  43.14 
 
 
251 aa  154  1e-36  Burkholderia sp. 383  Bacteria  normal  0.0198691  normal  0.370278 
 
 
-
 
NC_010552  BamMC406_4593  short-chain dehydrogenase/reductase SDR  41.9 
 
 
251 aa  152  5e-36  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.00700945 
 
 
-
 
NC_009338  Mflv_3281  short-chain dehydrogenase/reductase SDR  40.16 
 
 
248 aa  152  5.9999999999999996e-36  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.846295 
 
 
-
 
NC_010510  Mrad2831_6036  short-chain dehydrogenase/reductase SDR  41.73 
 
 
243 aa  150  2e-35  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.191154 
 
 
-
 
NC_013595  Sros_6972  short chain dehydrogenase  38.19 
 
 
251 aa  149  5e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3602  short-chain dehydrogenase/reductase SDR  38.43 
 
 
259 aa  149  5e-35  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_2914  short chain dehydrogenase  35.71 
 
 
255 aa  148  7e-35  Trichodesmium erythraeum IMS101  Bacteria  normal  0.892644  normal  0.135282 
 
 
-
 
NC_008688  Pden_4584  short chain dehydrogenase  39.76 
 
 
252 aa  148  7e-35  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.170316 
 
 
-
 
NC_011757  Mchl_1526  short-chain dehydrogenase/reductase SDR  40.55 
 
 
254 aa  147  1.0000000000000001e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2067  short-chain dehydrogenase/reductase SDR  36.76 
 
 
246 aa  146  3e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2751  short-chain dehydrogenase/reductase SDR  38.25 
 
 
252 aa  146  4.0000000000000006e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal 
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  39.76 
 
 
254 aa  145  4.0000000000000006e-34  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_007355  Mbar_A0777  2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase  37.75 
 
 
256 aa  145  7.0000000000000006e-34  Methanosarcina barkeri str. Fusaro  Archaea  normal  unclonable  0.000000000602932 
 
 
-
 
NC_010172  Mext_0265  short-chain dehydrogenase/reductase SDR  42.13 
 
 
243 aa  145  7.0000000000000006e-34  Methylobacterium extorquens PA1  Bacteria  normal  0.395731  normal 
 
 
-
 
NC_011892  Mnod_8333  short-chain dehydrogenase/reductase SDR  39.2 
 
 
257 aa  145  9e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.319832  n/a   
 
 
-
 
NC_013743  Htur_2798  short-chain dehydrogenase/reductase SDR  37.01 
 
 
256 aa  144  1e-33  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_011726  PCC8801_1575  short chain dehydrogenase  36.19 
 
 
249 aa  144  2e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007511  Bcep18194_B1464  Short-chain dehydrogenase/reductase SDR  37.8 
 
 
262 aa  144  2e-33  Burkholderia sp. 383  Bacteria  normal  0.305305  normal  0.474897 
 
 
-
 
NC_007348  Reut_B5464  NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR  37.25 
 
 
253 aa  143  3e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.852927  n/a   
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  38.46 
 
 
261 aa  142  4e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1619  short-chain dehydrogenase/reductase SDR  37.93 
 
 
253 aa  142  5e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.901509  normal  0.0346671 
 
 
-
 
NC_004310  BR1122  short chain dehydrogenase/reductase family oxidoreductase  35.6 
 
 
246 aa  142  6e-33  Brucella suis 1330  Bacteria  normal  0.0726405  n/a   
 
 
-
 
NC_007333  Tfu_1466  short-chain alcohol dehydrogenase  38.49 
 
 
267 aa  142  6e-33  Thermobifida fusca YX  Bacteria  normal  0.137862  n/a   
 
 
-
 
NC_011004  Rpal_4152  short-chain dehydrogenase/reductase SDR  39.04 
 
 
257 aa  142  6e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1080  short chain dehydrogenase/reductase family oxidoreductase  36.11 
 
 
246 aa  142  6e-33  Brucella ovis ATCC 25840  Bacteria  normal  0.38691  n/a   
 
 
-
 
NC_009921  Franean1_3295  short-chain dehydrogenase/reductase SDR  39.3 
 
 
246 aa  142  7e-33  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1425  short chain dehydrogenase  39.44 
 
 
253 aa  141  9e-33  Pseudomonas putida W619  Bacteria  normal  0.857979  normal  0.357324 
 
 
-
 
NC_009667  Oant_1136  short-chain dehydrogenase/reductase SDR  36.51 
 
 
249 aa  140  9.999999999999999e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.399133  n/a   
 
 
-
 
NC_013441  Gbro_2728  short-chain dehydrogenase/reductase SDR  37.5 
 
 
244 aa  140  9.999999999999999e-33  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_12720  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  36.25 
 
 
262 aa  141  9.999999999999999e-33  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0273  short-chain dehydrogenase/reductase SDR  35.06 
 
 
254 aa  141  9.999999999999999e-33  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
BN001302  ANIA_08163  oxidoreductase, short-chain dehydrogenase/reductase family (AFU_orthologue; AFUA_5G02870)  37.5 
 
 
251 aa  140  1.9999999999999998e-32  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.132741 
 
 
-
 
NC_010511  M446_5536  short chain dehydrogenase  38.82 
 
 
262 aa  140  1.9999999999999998e-32  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2450  3-oxoacyl-(acyl-carrier-protein) reductase  40.08 
 
 
249 aa  140  1.9999999999999998e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1963  short-chain dehydrogenase/reductase SDR  37.74 
 
 
257 aa  140  1.9999999999999998e-32  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.922459 
 
 
-
 
NC_014213  Mesil_3299  hypothetical protein  38.19 
 
 
257 aa  140  1.9999999999999998e-32  Meiothermus silvanus DSM 9946  Bacteria  normal  0.982919  normal  0.296802 
 
 
-
 
NC_007333  Tfu_1472  short-chain dehydrogenase/reductase (SDR) family protein  39.44 
 
 
282 aa  140  3e-32  Thermobifida fusca YX  Bacteria  normal  0.0273044  n/a   
 
 
-
 
NC_009668  Oant_3955  3-ketoacyl-(acyl-carrier-protein) reductase  34 
 
 
249 aa  139  3e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.572818  n/a   
 
 
-
 
NC_009485  BBta_4222  putative Levodione reductase  38.65 
 
 
257 aa  139  3e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_4671  short-chain dehydrogenase/reductase SDR  38.76 
 
 
283 aa  139  3.9999999999999997e-32  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0772  short-chain dehydrogenase/reductase SDR  40.47 
 
 
256 aa  139  3.9999999999999997e-32  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0642  short-chain dehydrogenase/reductase SDR  35.57 
 
 
252 aa  139  3.9999999999999997e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.220005 
 
 
-
 
NC_012850  Rleg_2263  short chain dehydrogenase  37.5 
 
 
255 aa  138  7e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00829126  normal  0.0703688 
 
 
-
 
NC_009921  Franean1_0481  short-chain dehydrogenase/reductase SDR  36.84 
 
 
256 aa  138  7e-32  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3366  short-chain dehydrogenase/reductase SDR  34.78 
 
 
250 aa  138  7.999999999999999e-32  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_1518  short chain dehydrogenase  37.07 
 
 
254 aa  138  8.999999999999999e-32  Marinomonas sp. MWYL1  Bacteria  normal  0.570528  normal  0.0138518 
 
 
-
 
NC_007952  Bxe_B0594  putative short-chain type dehydrogenase  39.29 
 
 
252 aa  137  1e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.722821  normal  0.132881 
 
 
-
 
NC_011757  Mchl_1552  short-chain dehydrogenase/reductase SDR  35.18 
 
 
248 aa  137  1e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0714452  normal 
 
 
-
 
NC_007492  Pfl01_2439  Short-chain dehydrogenase/reductase SDR  35.22 
 
 
249 aa  137  2e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.427983  normal  0.121811 
 
 
-
 
NC_007492  Pfl01_2727  Short-chain dehydrogenase/reductase SDR  39.02 
 
 
252 aa  137  2e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.932234  normal 
 
 
-
 
NC_013744  Htur_3816  short-chain dehydrogenase/reductase SDR  36.72 
 
 
253 aa  137  2e-31  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.840312  n/a   
 
 
-
 
NC_007963  Csal_2371  short-chain dehydrogenase/reductase SDR  35.97 
 
 
244 aa  137  2e-31  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3046  short-chain dehydrogenase/reductase SDR  39.76 
 
 
252 aa  137  2e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3804  short-chain dehydrogenase/reductase SDR  38.4 
 
 
253 aa  136  3.0000000000000003e-31  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4730  putative short-chain dehydrogenases/reductases (SDR) family protein  41.57 
 
 
260 aa  136  3.0000000000000003e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_5278  short-chain dehydrogenase/reductase SDR  38.58 
 
 
249 aa  136  3.0000000000000003e-31  Pseudomonas putida F1  Bacteria  normal  normal  0.917289 
 
 
-
 
NC_013595  Sros_7696  short-chain dehydrogenase/reductase SDR  41.5 
 
 
251 aa  136  3.0000000000000003e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.984897  normal  0.462493 
 
 
-
 
NC_008148  Rxyl_0541  short-chain dehydrogenase/reductase SDR  36.72 
 
 
251 aa  136  4e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2614  short-chain dehydrogenase/reductase SDR  36.4 
 
 
257 aa  136  4e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.042976  n/a   
 
 
-
 
NC_009439  Pmen_2680  short chain dehydrogenase  38 
 
 
253 aa  136  4e-31  Pseudomonas mendocina ymp  Bacteria  normal  0.313407  normal  0.819387 
 
 
-
 
NC_012850  Rleg_1601  short-chain dehydrogenase/reductase SDR  36.43 
 
 
258 aa  135  5e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3997  short-chain dehydrogenase/reductase SDR  36.22 
 
 
253 aa  135  5e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.895675 
 
 
-
 
NC_013037  Dfer_1833  short-chain dehydrogenase/reductase SDR  33.73 
 
 
263 aa  135  6.0000000000000005e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.50771  normal 
 
 
-
 
NC_009513  Lreu_1659  short-chain dehydrogenase/reductase SDR  33.98 
 
 
251 aa  135  7.000000000000001e-31  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0264  putative short-chain dehydrogenase  39.02 
 
 
262 aa  135  8e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_3070  short-chain dehydrogenase/reductase SDR  38.67 
 
 
267 aa  135  8e-31  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.49838  normal 
 
 
-
 
NC_008392  Bamb_6220  short-chain dehydrogenase/reductase SDR  37.98 
 
 
252 aa  135  8e-31  Burkholderia ambifaria AMMD  Bacteria  normal  0.621886  normal 
 
 
-
 
NC_010623  Bphy_4948  3-ketoacyl-(acyl-carrier-protein) reductase  36.8 
 
 
250 aa  135  8e-31  Burkholderia phymatum STM815  Bacteria  normal  0.539161  normal 
 
 
-
 
NC_007511  Bcep18194_B1510  Short-chain dehydrogenase/reductase SDR  38.04 
 
 
258 aa  135  9e-31  Burkholderia sp. 383  Bacteria  normal  0.623129  normal  0.55267 
 
 
-
 
NC_013501  Rmar_2036  short-chain dehydrogenase/reductase SDR  37.98 
 
 
258 aa  134  9.999999999999999e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007412  Ava_C0109  short chain dehydrogenase  36.61 
 
 
251 aa  134  9.999999999999999e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3288  short-chain dehydrogenase/reductase SDR  39.06 
 
 
264 aa  134  9.999999999999999e-31  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.197949 
 
 
-
 
NC_010172  Mext_1352  short-chain dehydrogenase/reductase SDR  34.78 
 
 
282 aa  134  9.999999999999999e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.316546  normal  0.241504 
 
 
-
 
NC_008148  Rxyl_0346  short-chain dehydrogenase/reductase SDR  36.26 
 
 
256 aa  134  9.999999999999999e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0244456  n/a   
 
 
-
 
NC_009338  Mflv_4505  short-chain dehydrogenase/reductase SDR  38.06 
 
 
260 aa  134  9.999999999999999e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_2828  short-chain dehydrogenase/reductase SDR  38.28 
 
 
252 aa  134  9.999999999999999e-31  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0610793 
 
 
-
 
NC_009921  Franean1_0480  short-chain dehydrogenase/reductase SDR  37.55 
 
 
251 aa  133  1.9999999999999998e-30  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2039  short chain dehydrogenase  37.89 
 
 
255 aa  133  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0111409  normal 
 
 
-
 
NC_007778  RPB_2264  Short-chain dehydrogenase/reductase SDR  35.71 
 
 
255 aa  133  1.9999999999999998e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.136651  normal 
 
 
-
 
NC_008786  Veis_3005  3-ketoacyl-(acyl-carrier-protein) reductase  37.5 
 
 
253 aa  134  1.9999999999999998e-30  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_4552  short-chain dehydrogenase/reductase SDR  37.45 
 
 
246 aa  133  1.9999999999999998e-30  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1300  short-chain dehydrogenase/reductase SDR  36.59 
 
 
262 aa  134  1.9999999999999998e-30  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2119  short-chain dehydrogenase/reductase SDR  38.43 
 
 
257 aa  134  1.9999999999999998e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3206  short-chain dehydrogenase/reductase SDR  35.32 
 
 
255 aa  133  1.9999999999999998e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1972  3-ketoacyl-(acyl-carrier-protein) reductase  35.57 
 
 
247 aa  134  1.9999999999999998e-30  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011369  Rleg2_4356  short chain dehydrogenase  33.98 
 
 
254 aa  134  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.146165 
 
 
-
 
NC_008699  Noca_2507  short-chain dehydrogenase/reductase SDR  36.61 
 
 
253 aa  134  1.9999999999999998e-30  Nocardioides sp. JS614  Bacteria  normal  0.024976  n/a   
 
 
-
 
NC_007794  Saro_2866  short-chain dehydrogenase/reductase SDR  36.65 
 
 
249 aa  133  3e-30  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.521278  n/a   
 
 
-
 
NC_010511  M446_0236  short-chain dehydrogenase/reductase SDR  35.32 
 
 
255 aa  133  3e-30  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00815339 
 
 
-
 
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