Gene Pput_5278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_5278 
Symbol 
ID5192149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5925712 
End bp5926461 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content62% 
IMG OID640589761 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001270580 
Protein GI148550478 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.917289 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTCTTC AAGGCAAAGT CGCAATCATC ACTGGCGCCG CATCGGCACG CGGGATCGGC 
CGGGCAACTG CGGCCACATT CGCTGCTCAA GGTGCCCGCG TGGTGATCCT CGATCTGGAT
GAAGCCGCTG CCCGCGATGC CGCAGCGTCT CTTGGCGAAG GGCATCTCGG CCTGGCCGCC
AACGTCGCCG ATCAGGCACA GGTAAATCAG GCCGTTGCGC AGATCATCGA GCACTTTGGC
CGCATCGACG TGCTGGTCAA CAACGCTGGC ATCACCCAAC CCCTCAAGAC CCTGGACATC
ACGCACAGCG ACTACGACAA GGTACTCGAC GTCAGCCTGC GCGGCACGCT ACTGATGTCT
CAGGCCGTCA TTCCCCTGAT GCGGGAGCAA CGTTCGGGCA GCATTGTCTG CATGTCCTCG
GTATCGGCGC AGCGTGGTGG TGGCATTTTC GGTGGCCCGC ACTACAGCGC AGCGAAAGCG
GGGGTACTGG GCCTGGCCAA GGCCATGGCA CGAGAGCTGG GGCCGGATAA CGTGCGCGTG
AACGCCATCG CCCCGGGTCT GATTCACACG GACATCACTG GCGGTTTGAT GCAGGACGAT
CGTCGCCACG CAATCATCGA CGGTATTCCA CTGGGTCGTC TGGGCGAAGC GCAAGACGTC
GCTAACGCCG CATTGTTTCT GGCCAGCGAT CTGTCGACTT ACCTGACCGG AATCACCCTG
GATGTAAACG GCGGCATGCT CATTCACTGA
 
Protein sequence
MLLQGKVAII TGAASARGIG RATAATFAAQ GARVVILDLD EAAARDAAAS LGEGHLGLAA 
NVADQAQVNQ AVAQIIEHFG RIDVLVNNAG ITQPLKTLDI THSDYDKVLD VSLRGTLLMS
QAVIPLMREQ RSGSIVCMSS VSAQRGGGIF GGPHYSAAKA GVLGLAKAMA RELGPDNVRV
NAIAPGLIHT DITGGLMQDD RRHAIIDGIP LGRLGEAQDV ANAALFLASD LSTYLTGITL
DVNGGMLIH