More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_2983 on replicon NC_012856
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  100 
 
 
296 aa  599  1e-170  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  100 
 
 
296 aa  599  1e-170  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_003295  RSc3048  sugar-phosphate transmembrane ABC transporter protein  96.62 
 
 
296 aa  584  1e-166  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.071315 
 
 
-
 
NC_007347  Reut_A2207  binding-protein dependent transport system inner membrane protein  82.58 
 
 
294 aa  471  1e-132  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_5369  binding-protein-dependent transport systems inner membrane component  79.8 
 
 
297 aa  469  1.0000000000000001e-131  Burkholderia phymatum STM815  Bacteria  normal  normal  0.469601 
 
 
-
 
NC_010676  Bphyt_6727  binding-protein-dependent transport systems inner membrane component  79.46 
 
 
298 aa  466  9.999999999999999e-131  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3394  binding-protein-dependent transport systems inner membrane component  79.31 
 
 
296 aa  461  1e-129  Variovorax paradoxus S110  Bacteria  normal  0.391737  n/a   
 
 
-
 
NC_007973  Rmet_2232  binding-protein-dependent transport systems inner membrane component  80.77 
 
 
294 aa  458  9.999999999999999e-129  Cupriavidus metallidurans CH34  Bacteria  normal  0.0344398  normal  0.169998 
 
 
-
 
NC_008786  Veis_2320  binding-protein-dependent transport systems inner membrane component  78.57 
 
 
298 aa  456  1e-127  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.292517  normal  0.792602 
 
 
-
 
NC_008752  Aave_0606  binding-protein-dependent transport systems inner membrane component  79.66 
 
 
298 aa  452  1.0000000000000001e-126  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0378  binding-protein-dependent transport systems inner membrane component  79.65 
 
 
298 aa  444  1.0000000000000001e-124  Acidovorax ebreus TPSY  Bacteria  normal  0.0188782  n/a   
 
 
-
 
NC_007908  Rfer_3674  binding-protein-dependent transport systems inner membrane component  75.34 
 
 
297 aa  436  1e-121  Rhodoferax ferrireducens T118  Bacteria  normal  0.0834675  n/a   
 
 
-
 
NC_010002  Daci_1027  binding-protein-dependent transport systems inner membrane component  79.37 
 
 
297 aa  432  1e-120  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0386  binding-protein-dependent transport systems inner membrane component  80.35 
 
 
298 aa  434  1e-120  Acidovorax sp. JS42  Bacteria  normal  0.675577  normal 
 
 
-
 
NC_007948  Bpro_0480  binding-protein-dependent transport systems inner membrane component  78.95 
 
 
296 aa  428  1e-119  Polaromonas sp. JS666  Bacteria  normal  0.0207202  normal 
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  71.02 
 
 
287 aa  411  1e-114  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  71.17 
 
 
287 aa  412  1e-114  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  70.57 
 
 
303 aa  409  1e-113  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  69.96 
 
 
288 aa  409  1e-113  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  70.32 
 
 
288 aa  409  1e-113  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_009654  Mmwyl1_0378  binding-protein-dependent transport systems inner membrane component  69.61 
 
 
289 aa  410  1e-113  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.374206 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  70.57 
 
 
288 aa  407  1e-113  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_013440  Hoch_5938  binding-protein-dependent transport systems inner membrane component  69.96 
 
 
294 aa  407  1.0000000000000001e-112  Haliangium ochraceum DSM 14365  Bacteria  normal  0.776913  normal 
 
 
-
 
NC_004578  PSPTO_3738  ABC transporter, permease protein  69.01 
 
 
288 aa  400  9.999999999999999e-111  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.482953  n/a   
 
 
-
 
NC_007005  Psyr_1739  binding-protein dependent transport system inner membrane protein  69.01 
 
 
288 aa  400  9.999999999999999e-111  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1442  binding-protein-dependent transport systems inner membrane component  68.62 
 
 
289 aa  394  1e-108  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0523794  n/a   
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  67.7 
 
 
300 aa  389  1e-107  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  66.44 
 
 
300 aa  384  1e-106  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_007493  RSP_2666  ABC sugar (glycerol) transporter, inner membrane subunit  65.14 
 
 
290 aa  381  1e-105  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2092  binding-protein-dependent transport systems inner membrane component  65.14 
 
 
292 aa  383  1e-105  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1324  binding-protein-dependent transport systems inner membrane component  65.14 
 
 
290 aa  381  1e-105  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  65.64 
 
 
300 aa  380  1e-104  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  65.64 
 
 
300 aa  380  1e-104  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  65.29 
 
 
300 aa  378  1e-104  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_012852  Rleg_5980  binding-protein-dependent transport systems inner membrane component  67.71 
 
 
288 aa  378  1e-104  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_4102  binding-protein-dependent transport systems inner membrane component  65.48 
 
 
290 aa  375  1e-103  Jannaschia sp. CCS1  Bacteria  normal  0.414832  normal  0.309443 
 
 
-
 
NC_008709  Ping_3172  ABC sugar (glycerol) transporter binding protein inner membrane protein  67.48 
 
 
286 aa  373  1e-102  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1205  binding-protein-dependent transport systems inner membrane component  66.55 
 
 
290 aa  373  1e-102  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.997435 
 
 
-
 
NC_008687  Pden_4390  binding-protein-dependent transport systems inner membrane component  62.8 
 
 
295 aa  364  1e-100  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.117002 
 
 
-
 
NC_009668  Oant_3979  binding-protein-dependent transport systems inner membrane component  68.82 
 
 
288 aa  362  5.0000000000000005e-99  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.774682  n/a   
 
 
-
 
NC_011989  Avi_0097  ABC transporter membrane spanning protein (sugar)  66.78 
 
 
295 aa  359  4e-98  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2906  binding-protein-dependent transport systems inner membrane component  66.67 
 
 
288 aa  358  5e-98  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011371  Rleg2_6467  binding-protein-dependent transport systems inner membrane component  68.33 
 
 
288 aa  355  5e-97  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  63.12 
 
 
319 aa  346  3e-94  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2419  binding-protein-dependent transport systems inner membrane component  59.93 
 
 
287 aa  342  4e-93  Ruegeria sp. TM1040  Bacteria  normal  0.0339831  normal  0.708038 
 
 
-
 
NC_009952  Dshi_3130  sugar ABC transporter  60.64 
 
 
287 aa  340  2e-92  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.199935  normal 
 
 
-
 
NC_008254  Meso_1594  binding-protein-dependent transport systems inner membrane component  62.24 
 
 
288 aa  337  1.9999999999999998e-91  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2098  binding-protein-dependent transport systems inner membrane component  48.96 
 
 
289 aa  286  4e-76  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0888929 
 
 
-
 
NC_007802  Jann_4106  binding-protein-dependent transport systems inner membrane component  41.75 
 
 
287 aa  198  7.999999999999999e-50  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  31.73 
 
 
291 aa  134  1.9999999999999998e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  32.85 
 
 
295 aa  127  2.0000000000000002e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  31.39 
 
 
313 aa  126  4.0000000000000003e-28  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  28.47 
 
 
291 aa  125  9e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  29.77 
 
 
294 aa  124  2e-27  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  29.24 
 
 
280 aa  124  2e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  27.16 
 
 
427 aa  124  2e-27  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  27.44 
 
 
312 aa  124  2e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  29.62 
 
 
286 aa  124  2e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  27.37 
 
 
291 aa  122  7e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  28.52 
 
 
310 aa  122  8e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_012669  Bcav_0571  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
296 aa  120  3e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  29.07 
 
 
287 aa  119  4.9999999999999996e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_20480  carbohydrate ABC transporter membrane protein  28.01 
 
 
318 aa  119  4.9999999999999996e-26  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0521728  normal  0.389193 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  26.71 
 
 
313 aa  119  6e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  28.84 
 
 
314 aa  118  9.999999999999999e-26  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
435 aa  118  9.999999999999999e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  30.69 
 
 
298 aa  117  1.9999999999999998e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_008146  Mmcs_2419  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
286 aa  117  3e-25  Mycobacterium sp. MCS  Bacteria  normal  0.235933  n/a   
 
 
-
 
NC_008705  Mkms_2464  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
286 aa  117  3e-25  Mycobacterium sp. KMS  Bacteria  normal  0.80505  normal 
 
 
-
 
NC_009077  Mjls_2458  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
286 aa  117  3e-25  Mycobacterium sp. JLS  Bacteria  normal  0.524108  normal 
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
318 aa  117  3e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  28.67 
 
 
300 aa  116  3.9999999999999997e-25  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  29.73 
 
 
308 aa  116  5e-25  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
289 aa  115  6e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
289 aa  115  6e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
299 aa  116  6e-25  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
289 aa  115  6e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  30.2 
 
 
306 aa  115  6.9999999999999995e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
289 aa  115  7.999999999999999e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  33.63 
 
 
289 aa  115  7.999999999999999e-25  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_011661  Dtur_1742  binding-protein-dependent transport systems inner membrane component  30.98 
 
 
292 aa  114  1.0000000000000001e-24  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1844  binding-protein-dependent transport systems inner membrane component  31.08 
 
 
291 aa  114  2.0000000000000002e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  0.476032  n/a   
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  28.42 
 
 
309 aa  114  2.0000000000000002e-24  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_012880  Dd703_3169  binding-protein-dependent transport systems inner membrane component  32.13 
 
 
290 aa  113  3e-24  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  28.72 
 
 
294 aa  113  4.0000000000000004e-24  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
289 aa  113  4.0000000000000004e-24  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
311 aa  112  5e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  28.52 
 
 
293 aa  112  7.000000000000001e-24  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  26.07 
 
 
312 aa  112  7.000000000000001e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
318 aa  112  7.000000000000001e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4077  binding-protein-dependent transport systems inner membrane component  28.52 
 
 
317 aa  112  1.0000000000000001e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.140823  normal  0.731226 
 
 
-
 
NC_008699  Noca_3682  binding-protein-dependent transport systems inner membrane component  28.76 
 
 
283 aa  111  1.0000000000000001e-23  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  28.03 
 
 
292 aa  111  1.0000000000000001e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  29.29 
 
 
309 aa  110  2.0000000000000002e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  30.63 
 
 
322 aa  110  2.0000000000000002e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
304 aa  111  2.0000000000000002e-23  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_012912  Dd1591_3241  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
290 aa  109  5e-23  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2540  ABC transporter permease  35.02 
 
 
306 aa  109  7.000000000000001e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  29.64 
 
 
288 aa  108  7.000000000000001e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_1990  binding-protein-dependent transport systems inner membrane component  27.86 
 
 
306 aa  108  8.000000000000001e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.306567  n/a   
 
 
-
 
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