Gene Smed_2906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_2906 
Symbol 
ID5323783 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009636 
Strand
Start bp3050110 
End bp3050976 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content59% 
IMG OID640791858 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001328571 
Protein GI150398104 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAAGA CCTGGAACAA CAAGGCCTGG TTCATGGTCC TGCCGGTGCT GGTGCTTGTC 
GCTTTCTCGG CGGTGATCCC GCTGATGACC GTCGTCAACT ATTCGGTACA GGACACTTTC
GGCAATAACG AGTTCTTCTG GGCCGGAACC GACTGGTTCC TGGATGTGCT CGAATCCGAC
CGGTTCTGGG ACGCACTCAC GCGCAACCTG ATCTTTTCGG CAATCATTCT CTCGATAGAA
ATCCCGCTCG GCATCATCAT CGCGCTCAAC ATGCCGAAGA AGGGCATCGG CGTGCCGATC
TGCCTCGTTC TGATGGCGCT GCCGCTGCTC ATTCCGTGGA ACGTCGTCGG CACTATCTGG
CAGGTCTTCG GCCGCGTCGA CATCGGCCTG CTCGGACGCA CGCTCGCCTC GCTAGGCATC
AATTATAATT ACGTGCAGAA CCCGTTCGAC GCCTGGGTCA CGCTGATCGT CATGGATGTC
TGGCACTGGA CAAGCCTGGT CGTGCTGCTC TGCTATGCCG GTCTGGTCTC GATCCCCGAC
GCCTATTACC AGGCCGCCAA GATCGACGGC GCCTCGCGCT GGTCGGTCTT CCGCTACATC
CAGCTTCCGA AGATGAAGCG TGTGCTTCTG ATCGCTTTCC TGCTGCGCTT CATGGACAGC
TTCATGATCT ACACGGAACC CTTCGTCGTG ACCGGCGGCG GTCCCGGCAA CTCGACCACC
TTCCTGTCCA TTGATCTGGT CAAGACGGCG ATCGGCCAAT TCGACCTCGG CCCGGCCGCA
GCCCTCTCGA TCATCTACTT CCTCATCATC CTGCTCTTGT CGTGGATCTT CTACACGGTG
ATGACCACGA GCGACGCGCA AGGCTGA
 
Protein sequence
MEKTWNNKAW FMVLPVLVLV AFSAVIPLMT VVNYSVQDTF GNNEFFWAGT DWFLDVLESD 
RFWDALTRNL IFSAIILSIE IPLGIIIALN MPKKGIGVPI CLVLMALPLL IPWNVVGTIW
QVFGRVDIGL LGRTLASLGI NYNYVQNPFD AWVTLIVMDV WHWTSLVVLL CYAGLVSIPD
AYYQAAKIDG ASRWSVFRYI QLPKMKRVLL IAFLLRFMDS FMIYTEPFVV TGGGPGNSTT
FLSIDLVKTA IGQFDLGPAA ALSIIYFLII LLLSWIFYTV MTTSDAQG