Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_4892 |
Symbol | |
ID | 6412578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 5259240 |
End bp | 5260142 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642714769 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001993856 |
Protein GI | 192293251 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.963081 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACAAGG TCGTCAACCA GAAAGCCTGG TTCCTGGTGC TGCCGGTGTT TGCCATCGTG GCGTTCTCGG CGATTCTGCC GCTGATGACG GTGGTGAACT ATTCGGTGCA GGACACCTTC GGCAACAACC AGTTCTTCTG GAACGGGGTC GGCTGGTTCA AGGAGCTGCT GGATCCGTCG ACCGATCTGG GTGGCCGGTT CTTCGCCTCG CTGTGGCGCA ACCTGGCGTT CTCGGCGATC ATTCTCGCCA TTGAAGTCCC GCTCGGCATC GTGGTGGCGC TGGCGATGCC GCGCCACGGC TGGTCGGTGG CGTTCTGCCT GGTGATCATG GCGCTGCCGC TGTTGATCCC GTGGAACGTG GTCGGCACGA TCTGGCAGAT CTTCGGCCGT CCCGACATCG GCTTGATGGG CTACACGCTC AATCATCTCG GCTTCAATTA TAACTACGTG TCCAACGATT TTGACGCCTG GGCCACGGTG GTGGTGATGG ATGTCTGGCA CTGGACCAGC CTGGTGGCGC TGCTGTGCTA TGCGGGCCTG AAGTCGATCC CCGACGCGTA TTATCAGGCG GCGCAGATCG ACGGCGCCTC GCGCTGGGCG GTGTTCAAGG CGATCCAGCT CCCGAAGATG CACCGCGTGC TGCTGATCGC CGTGCTGCTG CGGTTCATGG ACAGCTTCAT GATCTACACC GAGCCGTTCG TCGTCACCGG CGGCGGGCCG GGAAATTCGA CCACCTTCAT CTCGATCGAG CTGGTCAAGA TCGCGCTCGG CCAGTTCGAC CTCGGCAAGG CCGCGGCGCT GTCGATCGTC TACAACCTGA TCATCATTAT CGTGTGCTGG GTGTTCTACA CCGTGATGAC CAATGCCGGT AACGAGCGGC GACAGGCCGA AGGGAGTATG TGA
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Protein sequence | MDKVVNQKAW FLVLPVFAIV AFSAILPLMT VVNYSVQDTF GNNQFFWNGV GWFKELLDPS TDLGGRFFAS LWRNLAFSAI ILAIEVPLGI VVALAMPRHG WSVAFCLVIM ALPLLIPWNV VGTIWQIFGR PDIGLMGYTL NHLGFNYNYV SNDFDAWATV VVMDVWHWTS LVALLCYAGL KSIPDAYYQA AQIDGASRWA VFKAIQLPKM HRVLLIAVLL RFMDSFMIYT EPFVVTGGGP GNSTTFISIE LVKIALGQFD LGKAAALSIV YNLIIIIVCW VFYTVMTNAG NERRQAEGSM
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