More than 300 homologs were found in PanDaTox collection
for query gene Rfer_3674 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007908  Rfer_3674  binding-protein-dependent transport systems inner membrane component  100 
 
 
297 aa  599  1e-170  Rhodoferax ferrireducens T118  Bacteria  normal  0.0834675  n/a   
 
 
-
 
NC_008786  Veis_2320  binding-protein-dependent transport systems inner membrane component  88.26 
 
 
298 aa  520  1e-146  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.292517  normal  0.792602 
 
 
-
 
NC_011992  Dtpsy_0378  binding-protein-dependent transport systems inner membrane component  88.59 
 
 
298 aa  515  1.0000000000000001e-145  Acidovorax ebreus TPSY  Bacteria  normal  0.0188782  n/a   
 
 
-
 
NC_008752  Aave_0606  binding-protein-dependent transport systems inner membrane component  87.54 
 
 
298 aa  501  1e-141  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3394  binding-protein-dependent transport systems inner membrane component  85.67 
 
 
296 aa  498  1e-140  Variovorax paradoxus S110  Bacteria  normal  0.391737  n/a   
 
 
-
 
NC_008782  Ajs_0386  binding-protein-dependent transport systems inner membrane component  89.6 
 
 
298 aa  493  9.999999999999999e-139  Acidovorax sp. JS42  Bacteria  normal  0.675577  normal 
 
 
-
 
NC_007948  Bpro_0480  binding-protein-dependent transport systems inner membrane component  88.1 
 
 
296 aa  490  1e-137  Polaromonas sp. JS666  Bacteria  normal  0.0207202  normal 
 
 
-
 
NC_010002  Daci_1027  binding-protein-dependent transport systems inner membrane component  87.21 
 
 
297 aa  487  1e-137  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2232  binding-protein-dependent transport systems inner membrane component  82.01 
 
 
294 aa  481  1e-135  Cupriavidus metallidurans CH34  Bacteria  normal  0.0344398  normal  0.169998 
 
 
-
 
NC_007347  Reut_A2207  binding-protein dependent transport system inner membrane protein  81.66 
 
 
294 aa  480  1e-134  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc3048  sugar-phosphate transmembrane ABC transporter protein  75.68 
 
 
296 aa  464  1e-129  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.071315 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  75.34 
 
 
296 aa  463  1e-129  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  75.34 
 
 
296 aa  463  1e-129  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5369  binding-protein-dependent transport systems inner membrane component  77.74 
 
 
297 aa  430  1e-119  Burkholderia phymatum STM815  Bacteria  normal  normal  0.469601 
 
 
-
 
NC_010676  Bphyt_6727  binding-protein-dependent transport systems inner membrane component  77.39 
 
 
298 aa  428  1e-119  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0378  binding-protein-dependent transport systems inner membrane component  67.38 
 
 
289 aa  399  9.999999999999999e-111  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.374206 
 
 
-
 
NC_013440  Hoch_5938  binding-protein-dependent transport systems inner membrane component  69.42 
 
 
294 aa  396  1e-109  Haliangium ochraceum DSM 14365  Bacteria  normal  0.776913  normal 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  65.96 
 
 
287 aa  387  1e-107  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  64.91 
 
 
303 aa  385  1e-106  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  65.12 
 
 
288 aa  385  1e-106  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  66.55 
 
 
288 aa  386  1e-106  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_013173  Dbac_1442  binding-protein-dependent transport systems inner membrane component  66.67 
 
 
289 aa  387  1e-106  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0523794  n/a   
 
 
-
 
NC_004578  PSPTO_3738  ABC transporter, permease protein  65.6 
 
 
288 aa  382  1e-105  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.482953  n/a   
 
 
-
 
NC_007005  Psyr_1739  binding-protein dependent transport system inner membrane protein  65.6 
 
 
288 aa  382  1e-105  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2092  binding-protein-dependent transport systems inner membrane component  63.79 
 
 
292 aa  384  1e-105  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  65.84 
 
 
287 aa  383  1e-105  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  65.84 
 
 
288 aa  384  1e-105  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_007493  RSP_2666  ABC sugar (glycerol) transporter, inner membrane subunit  62.37 
 
 
290 aa  371  1e-102  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1324  binding-protein-dependent transport systems inner membrane component  62.37 
 
 
290 aa  371  1e-102  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_4102  binding-protein-dependent transport systems inner membrane component  61.25 
 
 
290 aa  362  3e-99  Jannaschia sp. CCS1  Bacteria  normal  0.414832  normal  0.309443 
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  62.98 
 
 
300 aa  362  4e-99  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  61.28 
 
 
300 aa  359  4e-98  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_009428  Rsph17025_1205  binding-protein-dependent transport systems inner membrane component  62.02 
 
 
290 aa  358  5e-98  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.997435 
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  61.09 
 
 
300 aa  358  8e-98  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  60.75 
 
 
300 aa  357  9.999999999999999e-98  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_008687  Pden_4390  binding-protein-dependent transport systems inner membrane component  62.85 
 
 
295 aa  356  1.9999999999999998e-97  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.117002 
 
 
-
 
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  60.54 
 
 
300 aa  356  1.9999999999999998e-97  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_008709  Ping_3172  ABC sugar (glycerol) transporter binding protein inner membrane protein  66.19 
 
 
286 aa  356  2.9999999999999997e-97  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_5980  binding-protein-dependent transport systems inner membrane component  64.13 
 
 
288 aa  348  8e-95  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2906  binding-protein-dependent transport systems inner membrane component  62.81 
 
 
288 aa  342  5e-93  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1594  binding-protein-dependent transport systems inner membrane component  61.32 
 
 
288 aa  335  5.999999999999999e-91  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0097  ABC transporter membrane spanning protein (sugar)  62.63 
 
 
295 aa  334  1e-90  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  62.24 
 
 
319 aa  332  4e-90  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2419  binding-protein-dependent transport systems inner membrane component  59.36 
 
 
287 aa  332  4e-90  Ruegeria sp. TM1040  Bacteria  normal  0.0339831  normal  0.708038 
 
 
-
 
NC_011371  Rleg2_6467  binding-protein-dependent transport systems inner membrane component  64.75 
 
 
288 aa  330  1e-89  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3130  sugar ABC transporter  59.01 
 
 
287 aa  329  3e-89  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.199935  normal 
 
 
-
 
NC_009668  Oant_3979  binding-protein-dependent transport systems inner membrane component  64.75 
 
 
288 aa  329  3e-89  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.774682  n/a   
 
 
-
 
NC_013223  Dret_2098  binding-protein-dependent transport systems inner membrane component  50 
 
 
289 aa  279  5e-74  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0888929 
 
 
-
 
NC_007802  Jann_4106  binding-protein-dependent transport systems inner membrane component  41.89 
 
 
287 aa  210  2e-53  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  30 
 
 
313 aa  122  9e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  30.2 
 
 
286 aa  121  9.999999999999999e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  31.37 
 
 
291 aa  120  1.9999999999999998e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3682  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
283 aa  120  1.9999999999999998e-26  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  30.89 
 
 
287 aa  120  1.9999999999999998e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
294 aa  121  1.9999999999999998e-26  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
315 aa  119  4.9999999999999996e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  27.57 
 
 
427 aa  119  7e-26  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  27.37 
 
 
312 aa  118  9.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_008146  Mmcs_2419  binding-protein-dependent transport systems inner membrane component  30.29 
 
 
286 aa  117  1.9999999999999998e-25  Mycobacterium sp. MCS  Bacteria  normal  0.235933  n/a   
 
 
-
 
NC_009664  Krad_1114  binding-protein-dependent transport systems inner membrane component  27.37 
 
 
319 aa  117  1.9999999999999998e-25  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.32149  normal  0.356013 
 
 
-
 
NC_008705  Mkms_2464  binding-protein-dependent transport systems inner membrane component  30.29 
 
 
286 aa  117  1.9999999999999998e-25  Mycobacterium sp. KMS  Bacteria  normal  0.80505  normal 
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  28.42 
 
 
291 aa  118  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_009077  Mjls_2458  binding-protein-dependent transport systems inner membrane component  30.29 
 
 
286 aa  117  1.9999999999999998e-25  Mycobacterium sp. JLS  Bacteria  normal  0.524108  normal 
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  29.07 
 
 
298 aa  117  3e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  27.24 
 
 
313 aa  117  3e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  28.78 
 
 
291 aa  116  3.9999999999999997e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
289 aa  116  5e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
289 aa  116  5e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  33.63 
 
 
289 aa  116  5e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
289 aa  115  6e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  29.57 
 
 
307 aa  115  1.0000000000000001e-24  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  32.2 
 
 
289 aa  114  3e-24  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
289 aa  113  3e-24  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
304 aa  113  4.0000000000000004e-24  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
295 aa  112  6e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
309 aa  111  1.0000000000000001e-23  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  32.94 
 
 
288 aa  110  2.0000000000000002e-23  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2540  ABC transporter permease  33.33 
 
 
306 aa  111  2.0000000000000002e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  28.91 
 
 
294 aa  109  5e-23  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  29.86 
 
 
318 aa  109  7.000000000000001e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  29.72 
 
 
435 aa  108  8.000000000000001e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  30.21 
 
 
318 aa  108  1e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0571  binding-protein-dependent transport systems inner membrane component  28.68 
 
 
296 aa  107  2e-22  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3933  binding-protein-dependent transport systems inner membrane component  29.27 
 
 
320 aa  107  3e-22  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.292649  n/a   
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  26.3 
 
 
310 aa  106  4e-22  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_010001  Cphy_3401  binding-protein-dependent transport systems inner membrane component  26.76 
 
 
305 aa  106  5e-22  Clostridium phytofermentans ISDg  Bacteria  normal  0.028536  n/a   
 
 
-
 
NC_009675  Anae109_1696  binding-protein-dependent transport systems inner membrane component  35.79 
 
 
291 aa  106  5e-22  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00180742  normal 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
280 aa  106  5e-22  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  31.31 
 
 
308 aa  106  6e-22  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  29.19 
 
 
312 aa  105  7e-22  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  28.62 
 
 
300 aa  105  8e-22  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  28.14 
 
 
280 aa  105  8e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  29.33 
 
 
314 aa  105  8e-22  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  30.11 
 
 
295 aa  105  9e-22  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  28.33 
 
 
286 aa  105  1e-21  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  29.32 
 
 
328 aa  105  1e-21  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1742  binding-protein-dependent transport systems inner membrane component  29.76 
 
 
292 aa  104  1e-21  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
311 aa  105  1e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  31.46 
 
 
292 aa  103  3e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0488  binding-protein-dependent transport systems inner membrane component  39.04 
 
 
302 aa  103  3e-21  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
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