More than 300 homologs were found in PanDaTox collection
for query gene PP_2262 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  100 
 
 
303 aa  614  1e-175  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  99.65 
 
 
288 aa  579  1e-164  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  97.2 
 
 
287 aa  567  1e-161  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  97.22 
 
 
288 aa  569  1e-161  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  88.81 
 
 
288 aa  524  1e-148  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  88.03 
 
 
287 aa  518  1e-146  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_004578  PSPTO_3738  ABC transporter, permease protein  85.31 
 
 
288 aa  510  1e-143  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.482953  n/a   
 
 
-
 
NC_007005  Psyr_1739  binding-protein dependent transport system inner membrane protein  85.31 
 
 
288 aa  510  1e-143  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0378  binding-protein-dependent transport systems inner membrane component  76.04 
 
 
289 aa  463  1e-129  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.374206 
 
 
-
 
NC_007963  Csal_2092  binding-protein-dependent transport systems inner membrane component  69.23 
 
 
292 aa  426  1e-118  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3172  ABC sugar (glycerol) transporter binding protein inner membrane protein  73.78 
 
 
286 aa  426  1e-118  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc3048  sugar-phosphate transmembrane ABC transporter protein  71.28 
 
 
296 aa  410  1e-114  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.071315 
 
 
-
 
NC_007493  RSP_2666  ABC sugar (glycerol) transporter, inner membrane subunit  67.13 
 
 
290 aa  408  1e-113  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5938  binding-protein-dependent transport systems inner membrane component  68.93 
 
 
294 aa  407  1e-113  Haliangium ochraceum DSM 14365  Bacteria  normal  0.776913  normal 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  70.57 
 
 
296 aa  409  1e-113  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  70.57 
 
 
296 aa  409  1e-113  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1324  binding-protein-dependent transport systems inner membrane component  67.13 
 
 
290 aa  408  1e-113  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4390  binding-protein-dependent transport systems inner membrane component  67.48 
 
 
295 aa  398  9.999999999999999e-111  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.117002 
 
 
-
 
NC_007347  Reut_A2207  binding-protein dependent transport system inner membrane protein  72.7 
 
 
294 aa  397  1e-109  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3394  binding-protein-dependent transport systems inner membrane component  71.02 
 
 
296 aa  392  1e-108  Variovorax paradoxus S110  Bacteria  normal  0.391737  n/a   
 
 
-
 
NC_009428  Rsph17025_1205  binding-protein-dependent transport systems inner membrane component  66.43 
 
 
290 aa  393  1e-108  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.997435 
 
 
-
 
NC_007973  Rmet_2232  binding-protein-dependent transport systems inner membrane component  71.63 
 
 
294 aa  390  1e-107  Cupriavidus metallidurans CH34  Bacteria  normal  0.0344398  normal  0.169998 
 
 
-
 
NC_007802  Jann_4102  binding-protein-dependent transport systems inner membrane component  64.21 
 
 
290 aa  387  1e-106  Jannaschia sp. CCS1  Bacteria  normal  0.414832  normal  0.309443 
 
 
-
 
NC_008752  Aave_0606  binding-protein-dependent transport systems inner membrane component  70.19 
 
 
298 aa  386  1e-106  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5369  binding-protein-dependent transport systems inner membrane component  70.99 
 
 
297 aa  387  1e-106  Burkholderia phymatum STM815  Bacteria  normal  normal  0.469601 
 
 
-
 
NC_009636  Smed_2906  binding-protein-dependent transport systems inner membrane component  68.31 
 
 
288 aa  387  1e-106  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_5980  binding-protein-dependent transport systems inner membrane component  66.43 
 
 
288 aa  381  1e-105  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  62.67 
 
 
300 aa  379  1e-104  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_011989  Avi_0097  ABC transporter membrane spanning protein (sugar)  69.01 
 
 
295 aa  379  1e-104  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  62.67 
 
 
300 aa  379  1e-104  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_011992  Dtpsy_0378  binding-protein-dependent transport systems inner membrane component  69.58 
 
 
298 aa  379  1e-104  Acidovorax ebreus TPSY  Bacteria  normal  0.0188782  n/a   
 
 
-
 
NC_010676  Bphyt_6727  binding-protein-dependent transport systems inner membrane component  70.23 
 
 
298 aa  380  1e-104  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  63.36 
 
 
300 aa  377  1e-104  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  63.01 
 
 
300 aa  378  1e-104  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  63.89 
 
 
300 aa  375  1e-103  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_008044  TM1040_2419  binding-protein-dependent transport systems inner membrane component  63.29 
 
 
287 aa  375  1e-103  Ruegeria sp. TM1040  Bacteria  normal  0.0339831  normal  0.708038 
 
 
-
 
NC_010002  Daci_1027  binding-protein-dependent transport systems inner membrane component  72.41 
 
 
297 aa  373  1e-102  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  67.01 
 
 
319 aa  373  1e-102  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3130  sugar ABC transporter  64.08 
 
 
287 aa  373  1e-102  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.199935  normal 
 
 
-
 
NC_007908  Rfer_3674  binding-protein-dependent transport systems inner membrane component  67.05 
 
 
297 aa  368  1e-101  Rhodoferax ferrireducens T118  Bacteria  normal  0.0834675  n/a   
 
 
-
 
NC_013173  Dbac_1442  binding-protein-dependent transport systems inner membrane component  64.29 
 
 
289 aa  369  1e-101  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0523794  n/a   
 
 
-
 
NC_008786  Veis_2320  binding-protein-dependent transport systems inner membrane component  66.08 
 
 
298 aa  369  1e-101  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.292517  normal  0.792602 
 
 
-
 
NC_009668  Oant_3979  binding-protein-dependent transport systems inner membrane component  67.83 
 
 
288 aa  367  1e-100  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.774682  n/a   
 
 
-
 
NC_007948  Bpro_0480  binding-protein-dependent transport systems inner membrane component  68.68 
 
 
296 aa  359  3e-98  Polaromonas sp. JS666  Bacteria  normal  0.0207202  normal 
 
 
-
 
NC_008782  Ajs_0386  binding-protein-dependent transport systems inner membrane component  67.55 
 
 
298 aa  359  3e-98  Acidovorax sp. JS42  Bacteria  normal  0.675577  normal 
 
 
-
 
NC_011371  Rleg2_6467  binding-protein-dependent transport systems inner membrane component  65.73 
 
 
288 aa  359  3e-98  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1594  binding-protein-dependent transport systems inner membrane component  64.21 
 
 
288 aa  355  3.9999999999999996e-97  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2098  binding-protein-dependent transport systems inner membrane component  52.31 
 
 
289 aa  307  1.0000000000000001e-82  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0888929 
 
 
-
 
NC_007802  Jann_4106  binding-protein-dependent transport systems inner membrane component  41.9 
 
 
287 aa  207  2e-52  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
314 aa  132  6.999999999999999e-30  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  30.45 
 
 
288 aa  128  2.0000000000000002e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
315 aa  125  1e-27  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  30.64 
 
 
298 aa  124  2e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  30.6 
 
 
311 aa  122  7e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
313 aa  122  7e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  29.82 
 
 
291 aa  122  8e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  28.43 
 
 
309 aa  122  9e-27  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  33.92 
 
 
289 aa  120  3e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  33.92 
 
 
289 aa  120  3e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  33.92 
 
 
289 aa  120  3e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
289 aa  120  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  28.39 
 
 
318 aa  119  7e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  34.23 
 
 
289 aa  118  9.999999999999999e-26  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  28.16 
 
 
318 aa  118  9.999999999999999e-26  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  32.2 
 
 
289 aa  117  1.9999999999999998e-25  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  29.88 
 
 
300 aa  117  3e-25  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  26.5 
 
 
427 aa  117  3e-25  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
299 aa  116  3.9999999999999997e-25  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
294 aa  116  5e-25  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
294 aa  115  6e-25  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  26.45 
 
 
322 aa  116  6e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  28.36 
 
 
280 aa  114  2.0000000000000002e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  27.39 
 
 
312 aa  114  2.0000000000000002e-24  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
435 aa  114  3e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_2540  ABC transporter permease  33.33 
 
 
306 aa  113  5e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
286 aa  112  6e-24  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_011661  Dtur_1742  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
292 aa  112  7.000000000000001e-24  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  27.27 
 
 
318 aa  112  8.000000000000001e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  31.49 
 
 
287 aa  112  9e-24  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_20480  carbohydrate ABC transporter membrane protein  27.4 
 
 
318 aa  111  2.0000000000000002e-23  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0521728  normal  0.389193 
 
 
-
 
NC_013739  Cwoe_0172  binding-protein-dependent transport systems inner membrane component  29.33 
 
 
324 aa  111  2.0000000000000002e-23  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  27.76 
 
 
310 aa  111  2.0000000000000002e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_008541  Arth_3328  binding-protein-dependent transport systems inner membrane component  29.01 
 
 
314 aa  110  3e-23  Arthrobacter sp. FB24  Bacteria  normal  0.0166533  n/a   
 
 
-
 
NC_011886  Achl_2900  binding-protein-dependent transport systems inner membrane component  28.67 
 
 
295 aa  109  5e-23  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_0049  binding-protein-dependent transport systems inner membrane component  28.67 
 
 
295 aa  108  8.000000000000001e-23  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
308 aa  108  1e-22  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3668  binding-protein-dependent transport systems inner membrane component  28 
 
 
299 aa  108  1e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  27.99 
 
 
309 aa  107  2e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_012848  Rleg_4941  binding-protein-dependent transport systems inner membrane component  32.16 
 
 
309 aa  107  2e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3130  binding-protein-dependent transport systems inner membrane component  29.21 
 
 
314 aa  107  3e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    decreased coverage  0.00699527 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  30.83 
 
 
306 aa  107  3e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  24.74 
 
 
312 aa  107  3e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_012912  Dd1591_3241  binding-protein-dependent transport systems inner membrane component  30.92 
 
 
290 aa  107  3e-22  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  25.27 
 
 
291 aa  106  4e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_012848  Rleg_4864  binding-protein-dependent transport systems inner membrane component  24.92 
 
 
319 aa  107  4e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.243677  normal  0.263269 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  25.34 
 
 
296 aa  106  5e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  29.35 
 
 
295 aa  106  5e-22  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  32.33 
 
 
304 aa  105  6e-22  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  28.2 
 
 
293 aa  106  6e-22  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_008699  Noca_3682  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
283 aa  106  6e-22  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
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