More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_6727 on replicon NC_010676
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010676  Bphyt_6727  binding-protein-dependent transport systems inner membrane component  100 
 
 
298 aa  603  1.0000000000000001e-171  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5369  binding-protein-dependent transport systems inner membrane component  94.28 
 
 
297 aa  538  9.999999999999999e-153  Burkholderia phymatum STM815  Bacteria  normal  normal  0.469601 
 
 
-
 
NC_003295  RSc3048  sugar-phosphate transmembrane ABC transporter protein  80.13 
 
 
296 aa  495  1e-139  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.071315 
 
 
-
 
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  79.46 
 
 
296 aa  493  9.999999999999999e-139  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  79.46 
 
 
296 aa  493  9.999999999999999e-139  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_012791  Vapar_3394  binding-protein-dependent transport systems inner membrane component  80.28 
 
 
296 aa  459  9.999999999999999e-129  Variovorax paradoxus S110  Bacteria  normal  0.391737  n/a   
 
 
-
 
NC_007347  Reut_A2207  binding-protein dependent transport system inner membrane protein  80.07 
 
 
294 aa  457  1e-127  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2232  binding-protein-dependent transport systems inner membrane component  79.72 
 
 
294 aa  456  1e-127  Cupriavidus metallidurans CH34  Bacteria  normal  0.0344398  normal  0.169998 
 
 
-
 
NC_008786  Veis_2320  binding-protein-dependent transport systems inner membrane component  74.49 
 
 
298 aa  445  1.0000000000000001e-124  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.292517  normal  0.792602 
 
 
-
 
NC_011992  Dtpsy_0378  binding-protein-dependent transport systems inner membrane component  77.21 
 
 
298 aa  442  1e-123  Acidovorax ebreus TPSY  Bacteria  normal  0.0188782  n/a   
 
 
-
 
NC_008752  Aave_0606  binding-protein-dependent transport systems inner membrane component  76.11 
 
 
298 aa  437  1e-121  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1027  binding-protein-dependent transport systems inner membrane component  79.45 
 
 
297 aa  432  1e-120  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3674  binding-protein-dependent transport systems inner membrane component  77.39 
 
 
297 aa  428  1e-119  Rhodoferax ferrireducens T118  Bacteria  normal  0.0834675  n/a   
 
 
-
 
NC_007948  Bpro_0480  binding-protein-dependent transport systems inner membrane component  80.28 
 
 
296 aa  426  1e-118  Polaromonas sp. JS666  Bacteria  normal  0.0207202  normal 
 
 
-
 
NC_008782  Ajs_0386  binding-protein-dependent transport systems inner membrane component  76.19 
 
 
298 aa  418  1e-116  Acidovorax sp. JS42  Bacteria  normal  0.675577  normal 
 
 
-
 
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  68.42 
 
 
303 aa  399  9.999999999999999e-111  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_013440  Hoch_5938  binding-protein-dependent transport systems inner membrane component  67.01 
 
 
294 aa  400  9.999999999999999e-111  Haliangium ochraceum DSM 14365  Bacteria  normal  0.776913  normal 
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  68.2 
 
 
288 aa  399  9.999999999999999e-111  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  68.53 
 
 
287 aa  400  9.999999999999999e-111  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  66.9 
 
 
287 aa  398  9.999999999999999e-111  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  68.42 
 
 
288 aa  399  9.999999999999999e-111  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  67.83 
 
 
288 aa  399  9.999999999999999e-111  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_004578  PSPTO_3738  ABC transporter, permease protein  67.01 
 
 
288 aa  397  1e-109  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.482953  n/a   
 
 
-
 
NC_007005  Psyr_1739  binding-protein dependent transport system inner membrane protein  67.01 
 
 
288 aa  397  1e-109  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0378  binding-protein-dependent transport systems inner membrane component  66.67 
 
 
289 aa  395  1e-109  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.374206 
 
 
-
 
NC_013173  Dbac_1442  binding-protein-dependent transport systems inner membrane component  66.9 
 
 
289 aa  385  1e-106  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0523794  n/a   
 
 
-
 
NC_007493  RSP_2666  ABC sugar (glycerol) transporter, inner membrane subunit  64.34 
 
 
290 aa  379  1e-104  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  63.7 
 
 
300 aa  379  1e-104  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_007963  Csal_2092  binding-protein-dependent transport systems inner membrane component  64.52 
 
 
292 aa  378  1e-104  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1324  binding-protein-dependent transport systems inner membrane component  64.34 
 
 
290 aa  379  1e-104  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  62.54 
 
 
300 aa  377  1e-103  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  62.54 
 
 
300 aa  377  1e-103  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_007802  Jann_4102  binding-protein-dependent transport systems inner membrane component  63.29 
 
 
290 aa  375  1e-103  Jannaschia sp. CCS1  Bacteria  normal  0.414832  normal  0.309443 
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  62.54 
 
 
300 aa  376  1e-103  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  63.21 
 
 
300 aa  377  1e-103  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_008709  Ping_3172  ABC sugar (glycerol) transporter binding protein inner membrane protein  66.78 
 
 
286 aa  370  1e-101  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1205  binding-protein-dependent transport systems inner membrane component  64.34 
 
 
290 aa  370  1e-101  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.997435 
 
 
-
 
NC_008687  Pden_4390  binding-protein-dependent transport systems inner membrane component  64.11 
 
 
295 aa  364  1e-99  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.117002 
 
 
-
 
NC_012852  Rleg_5980  binding-protein-dependent transport systems inner membrane component  65.12 
 
 
288 aa  363  2e-99  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  64.58 
 
 
319 aa  352  5.9999999999999994e-96  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2419  binding-protein-dependent transport systems inner membrane component  59.22 
 
 
287 aa  347  1e-94  Ruegeria sp. TM1040  Bacteria  normal  0.0339831  normal  0.708038 
 
 
-
 
NC_009636  Smed_2906  binding-protein-dependent transport systems inner membrane component  63.98 
 
 
288 aa  345  4e-94  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3130  sugar ABC transporter  60.64 
 
 
287 aa  345  5e-94  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.199935  normal 
 
 
-
 
NC_011371  Rleg2_6467  binding-protein-dependent transport systems inner membrane component  65.78 
 
 
288 aa  344  1e-93  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0097  ABC transporter membrane spanning protein (sugar)  63.96 
 
 
295 aa  340  1e-92  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3979  binding-protein-dependent transport systems inner membrane component  64.64 
 
 
288 aa  337  9.999999999999999e-92  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.774682  n/a   
 
 
-
 
NC_008254  Meso_1594  binding-protein-dependent transport systems inner membrane component  61.27 
 
 
288 aa  334  1e-90  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_2098  binding-protein-dependent transport systems inner membrane component  51.57 
 
 
289 aa  293  2e-78  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0888929 
 
 
-
 
NC_007802  Jann_4106  binding-protein-dependent transport systems inner membrane component  41.26 
 
 
287 aa  202  8e-51  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  29.76 
 
 
291 aa  134  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  30.1 
 
 
291 aa  133  3.9999999999999996e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
295 aa  130  2.0000000000000002e-29  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  31 
 
 
291 aa  129  8.000000000000001e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
294 aa  127  2.0000000000000002e-28  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
313 aa  127  3e-28  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  28.4 
 
 
427 aa  124  1e-27  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  34.78 
 
 
289 aa  123  3e-27  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
289 aa  124  3e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
289 aa  124  3e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
289 aa  124  3e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
289 aa  123  3e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
286 aa  123  3e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
287 aa  122  6e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  30.56 
 
 
318 aa  122  7e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  29.72 
 
 
298 aa  122  9.999999999999999e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  28.16 
 
 
280 aa  121  9.999999999999999e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
289 aa  121  9.999999999999999e-27  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  32.05 
 
 
308 aa  121  9.999999999999999e-27  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
322 aa  121  1.9999999999999998e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
318 aa  120  1.9999999999999998e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  27.08 
 
 
312 aa  121  1.9999999999999998e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
292 aa  119  4.9999999999999996e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  27.08 
 
 
313 aa  119  4.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_012669  Bcav_0571  binding-protein-dependent transport systems inner membrane component  29.04 
 
 
296 aa  119  6e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  26.94 
 
 
314 aa  118  9.999999999999999e-26  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_009675  Anae109_1696  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
291 aa  118  9.999999999999999e-26  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00180742  normal 
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  29.88 
 
 
288 aa  118  1.9999999999999998e-25  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  35.1 
 
 
304 aa  117  1.9999999999999998e-25  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  30.2 
 
 
306 aa  117  3e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_013093  Amir_1844  binding-protein-dependent transport systems inner membrane component  30.69 
 
 
291 aa  116  3.9999999999999997e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  0.476032  n/a   
 
 
-
 
NC_008699  Noca_3682  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
283 aa  116  6e-25  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3169  binding-protein-dependent transport systems inner membrane component  37.87 
 
 
290 aa  115  8.999999999999998e-25  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  30.37 
 
 
300 aa  114  1.0000000000000001e-24  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_012853  Rleg_5697  binding-protein-dependent transport systems inner membrane component  31.66 
 
 
305 aa  114  1.0000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.121734 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  29.03 
 
 
435 aa  115  1.0000000000000001e-24  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  26.24 
 
 
318 aa  114  2.0000000000000002e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  28.09 
 
 
280 aa  113  3e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_014165  Tbis_1088  binding-protein-dependent transporter inner membrane component  32.4 
 
 
288 aa  113  4.0000000000000004e-24  Thermobispora bispora DSM 43833  Bacteria  normal  0.616528  hitchhiker  0.00755847 
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  28.75 
 
 
286 aa  113  4.0000000000000004e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3241  binding-protein-dependent transport systems inner membrane component  37.43 
 
 
290 aa  113  4.0000000000000004e-24  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  27.86 
 
 
312 aa  113  5e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  28.75 
 
 
286 aa  112  8.000000000000001e-24  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_012848  Rleg_4941  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
309 aa  112  8.000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2419  binding-protein-dependent transport systems inner membrane component  29.02 
 
 
286 aa  112  9e-24  Mycobacterium sp. MCS  Bacteria  normal  0.235933  n/a   
 
 
-
 
NC_008705  Mkms_2464  binding-protein-dependent transport systems inner membrane component  29.02 
 
 
286 aa  112  9e-24  Mycobacterium sp. KMS  Bacteria  normal  0.80505  normal 
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  26.22 
 
 
310 aa  112  9e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_009077  Mjls_2458  binding-protein-dependent transport systems inner membrane component  29.02 
 
 
286 aa  112  9e-24  Mycobacterium sp. JLS  Bacteria  normal  0.524108  normal 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
307 aa  111  1.0000000000000001e-23  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_013172  Bfae_01820  permease component of ABC-type sugar transporter  29.96 
 
 
312 aa  110  2.0000000000000002e-23  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  27.66 
 
 
309 aa  111  2.0000000000000002e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
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