More than 300 homologs were found in PanDaTox collection
for query gene Rpal_4892 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  100 
 
 
300 aa  607  1e-173  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  96.99 
 
 
300 aa  587  1e-166  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  95.99 
 
 
300 aa  583  1.0000000000000001e-165  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  92.33 
 
 
300 aa  556  1e-157  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  89.93 
 
 
300 aa  552  1e-156  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  79.17 
 
 
319 aa  464  1e-129  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2666  ABC sugar (glycerol) transporter, inner membrane subunit  71.43 
 
 
290 aa  424  1e-118  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_012852  Rleg_5980  binding-protein-dependent transport systems inner membrane component  73.38 
 
 
288 aa  424  1e-118  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1324  binding-protein-dependent transport systems inner membrane component  71.43 
 
 
290 aa  424  1e-118  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0097  ABC transporter membrane spanning protein (sugar)  74.32 
 
 
295 aa  420  1e-116  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2906  binding-protein-dependent transport systems inner membrane component  72.95 
 
 
288 aa  418  1e-116  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1594  binding-protein-dependent transport systems inner membrane component  73.88 
 
 
288 aa  413  1e-114  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1205  binding-protein-dependent transport systems inner membrane component  71.43 
 
 
290 aa  411  1e-114  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.997435 
 
 
-
 
NC_011371  Rleg2_6467  binding-protein-dependent transport systems inner membrane component  73.38 
 
 
288 aa  410  1e-113  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3979  binding-protein-dependent transport systems inner membrane component  72.6 
 
 
288 aa  409  1e-113  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.774682  n/a   
 
 
-
 
NC_008687  Pden_4390  binding-protein-dependent transport systems inner membrane component  70.03 
 
 
295 aa  401  1e-111  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.117002 
 
 
-
 
NC_007802  Jann_4102  binding-protein-dependent transport systems inner membrane component  67.71 
 
 
290 aa  397  1e-109  Jannaschia sp. CCS1  Bacteria  normal  0.414832  normal  0.309443 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  66.44 
 
 
287 aa  393  1e-108  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_009952  Dshi_3130  sugar ABC transporter  67.25 
 
 
287 aa  389  1e-107  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.199935  normal 
 
 
-
 
NC_004578  PSPTO_3738  ABC transporter, permease protein  65.98 
 
 
288 aa  385  1e-106  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.482953  n/a   
 
 
-
 
NC_007005  Psyr_1739  binding-protein dependent transport system inner membrane protein  65.98 
 
 
288 aa  385  1e-106  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2419  binding-protein-dependent transport systems inner membrane component  66.2 
 
 
287 aa  385  1e-106  Ruegeria sp. TM1040  Bacteria  normal  0.0339831  normal  0.708038 
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  63.82 
 
 
287 aa  382  1e-105  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  63.95 
 
 
288 aa  382  1e-105  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  63.01 
 
 
303 aa  378  1e-104  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  65.29 
 
 
296 aa  378  1e-104  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  65.29 
 
 
296 aa  378  1e-104  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  63.82 
 
 
288 aa  380  1e-104  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_003295  RSc3048  sugar-phosphate transmembrane ABC transporter protein  64.86 
 
 
296 aa  377  1e-103  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.071315 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  63.01 
 
 
288 aa  377  1e-103  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_009654  Mmwyl1_0378  binding-protein-dependent transport systems inner membrane component  64.26 
 
 
289 aa  376  1e-103  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.374206 
 
 
-
 
NC_007347  Reut_A2207  binding-protein dependent transport system inner membrane protein  65.4 
 
 
294 aa  363  1e-99  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2232  binding-protein-dependent transport systems inner membrane component  65.74 
 
 
294 aa  362  5.0000000000000005e-99  Cupriavidus metallidurans CH34  Bacteria  normal  0.0344398  normal  0.169998 
 
 
-
 
NC_010623  Bphy_5369  binding-protein-dependent transport systems inner membrane component  66.91 
 
 
297 aa  362  6e-99  Burkholderia phymatum STM815  Bacteria  normal  normal  0.469601 
 
 
-
 
NC_007963  Csal_2092  binding-protein-dependent transport systems inner membrane component  58.78 
 
 
292 aa  361  8e-99  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5938  binding-protein-dependent transport systems inner membrane component  60.54 
 
 
294 aa  360  2e-98  Haliangium ochraceum DSM 14365  Bacteria  normal  0.776913  normal 
 
 
-
 
NC_010676  Bphyt_6727  binding-protein-dependent transport systems inner membrane component  62.54 
 
 
298 aa  358  5e-98  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_3172  ABC sugar (glycerol) transporter binding protein inner membrane protein  63.82 
 
 
286 aa  355  5e-97  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3394  binding-protein-dependent transport systems inner membrane component  61.15 
 
 
296 aa  353  2e-96  Variovorax paradoxus S110  Bacteria  normal  0.391737  n/a   
 
 
-
 
NC_013173  Dbac_1442  binding-protein-dependent transport systems inner membrane component  61.36 
 
 
289 aa  352  5e-96  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0523794  n/a   
 
 
-
 
NC_008786  Veis_2320  binding-protein-dependent transport systems inner membrane component  61.15 
 
 
298 aa  352  5.9999999999999994e-96  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.292517  normal  0.792602 
 
 
-
 
NC_008752  Aave_0606  binding-protein-dependent transport systems inner membrane component  61.15 
 
 
298 aa  348  4e-95  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0480  binding-protein-dependent transport systems inner membrane component  63.39 
 
 
296 aa  344  8e-94  Polaromonas sp. JS666  Bacteria  normal  0.0207202  normal 
 
 
-
 
NC_011992  Dtpsy_0378  binding-protein-dependent transport systems inner membrane component  62.16 
 
 
298 aa  344  8.999999999999999e-94  Acidovorax ebreus TPSY  Bacteria  normal  0.0188782  n/a   
 
 
-
 
NC_007908  Rfer_3674  binding-protein-dependent transport systems inner membrane component  60.54 
 
 
297 aa  337  9.999999999999999e-92  Rhodoferax ferrireducens T118  Bacteria  normal  0.0834675  n/a   
 
 
-
 
NC_010002  Daci_1027  binding-protein-dependent transport systems inner membrane component  60.54 
 
 
297 aa  332  6e-90  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0386  binding-protein-dependent transport systems inner membrane component  60.47 
 
 
298 aa  330  1e-89  Acidovorax sp. JS42  Bacteria  normal  0.675577  normal 
 
 
-
 
NC_013223  Dret_2098  binding-protein-dependent transport systems inner membrane component  47.64 
 
 
289 aa  281  8.000000000000001e-75  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0888929 
 
 
-
 
NC_007802  Jann_4106  binding-protein-dependent transport systems inner membrane component  43.69 
 
 
287 aa  209  4e-53  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  31.19 
 
 
291 aa  140  3e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
291 aa  140  3.9999999999999997e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  29.45 
 
 
291 aa  133  5e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  28.87 
 
 
314 aa  130  3e-29  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  30.63 
 
 
308 aa  123  4e-27  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
311 aa  123  4e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  31.49 
 
 
280 aa  122  8e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
435 aa  121  1.9999999999999998e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011992  Dtpsy_0790  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
293 aa  117  1.9999999999999998e-25  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  29.35 
 
 
298 aa  117  3e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_008782  Ajs_0861  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
293 aa  117  3e-25  Acidovorax sp. JS42  Bacteria  normal  normal  0.533828 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  25.52 
 
 
313 aa  115  6e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_007908  Rfer_0953  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
292 aa  115  6.9999999999999995e-25  Rhodoferax ferrireducens T118  Bacteria  normal  0.568052  n/a   
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  29.88 
 
 
292 aa  115  8.999999999999998e-25  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  24.83 
 
 
312 aa  115  1.0000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  26.99 
 
 
427 aa  114  1.0000000000000001e-24  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  28.83 
 
 
312 aa  114  2.0000000000000002e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_012669  Bcav_0571  binding-protein-dependent transport systems inner membrane component  28.17 
 
 
296 aa  114  2.0000000000000002e-24  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  29.9 
 
 
293 aa  114  2.0000000000000002e-24  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  27.99 
 
 
315 aa  113  3e-24  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  30.57 
 
 
312 aa  112  5e-24  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  29.34 
 
 
280 aa  112  6e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  29.22 
 
 
286 aa  112  6e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  29.22 
 
 
286 aa  112  1.0000000000000001e-23  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  28.32 
 
 
295 aa  111  1.0000000000000001e-23  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  28.73 
 
 
322 aa  112  1.0000000000000001e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  28.38 
 
 
294 aa  110  3e-23  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  30.15 
 
 
299 aa  110  4.0000000000000004e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  28.94 
 
 
312 aa  110  4.0000000000000004e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_010627  Bphy_7450  binding-protein-dependent transport systems inner membrane component  31.92 
 
 
316 aa  109  6e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
318 aa  109  6e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  32.32 
 
 
318 aa  108  8.000000000000001e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_4401  binding-protein-dependent transport systems inner membrane component  26.88 
 
 
316 aa  108  9.000000000000001e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2284  binding-protein-dependent transport systems inner membrane component  26.46 
 
 
291 aa  108  1e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.257134 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
306 aa  107  2e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_009485  BBta_2540  ABC transporter permease  33.8 
 
 
306 aa  107  2e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  28.72 
 
 
313 aa  107  3e-22  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  28.51 
 
 
300 aa  106  4e-22  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  30.2 
 
 
288 aa  106  5e-22  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  28.18 
 
 
309 aa  106  5e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_009484  Acry_3002  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
292 aa  106  5e-22  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5702  binding-protein-dependent transport systems inner membrane component  30.56 
 
 
300 aa  105  7e-22  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  27.55 
 
 
310 aa  105  8e-22  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_010524  Lcho_3242  binding-protein-dependent transport systems inner membrane component  26.78 
 
 
317 aa  105  1e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
304 aa  104  1e-21  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  26.58 
 
 
296 aa  105  1e-21  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_012853  Rleg_5697  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
305 aa  104  2e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.121734 
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  33 
 
 
356 aa  104  2e-21  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  27.9 
 
 
315 aa  104  2e-21  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  29.56 
 
 
286 aa  104  2e-21  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_008786  Veis_0803  binding-protein-dependent transport systems inner membrane component  34.91 
 
 
299 aa  103  3e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.270687  normal 
 
 
-
 
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