More than 300 homologs were found in PanDaTox collection
for query gene Rsph17025_1205 on replicon NC_009428
Organism: Rhodobacter sphaeroides ATCC 17025



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009428  Rsph17025_1205  binding-protein-dependent transport systems inner membrane component  100 
 
 
290 aa  585  1e-166  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.997435 
 
 
-
 
NC_007493  RSP_2666  ABC sugar (glycerol) transporter, inner membrane subunit  97.24 
 
 
290 aa  575  1.0000000000000001e-163  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1324  binding-protein-dependent transport systems inner membrane component  97.24 
 
 
290 aa  575  1.0000000000000001e-163  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4390  binding-protein-dependent transport systems inner membrane component  86.46 
 
 
295 aa  503  1e-141  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.117002 
 
 
-
 
NC_007802  Jann_4102  binding-protein-dependent transport systems inner membrane component  76.74 
 
 
290 aa  470  1.0000000000000001e-131  Jannaschia sp. CCS1  Bacteria  normal  0.414832  normal  0.309443 
 
 
-
 
NC_012852  Rleg_5980  binding-protein-dependent transport systems inner membrane component  76.74 
 
 
288 aa  444  1.0000000000000001e-124  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1594  binding-protein-dependent transport systems inner membrane component  78.67 
 
 
288 aa  442  1e-123  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2906  binding-protein-dependent transport systems inner membrane component  78.4 
 
 
288 aa  443  1e-123  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  73.56 
 
 
300 aa  440  9.999999999999999e-123  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  71.77 
 
 
300 aa  431  1e-120  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  71.72 
 
 
300 aa  432  1e-120  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_011989  Avi_0097  ABC transporter membrane spanning protein (sugar)  78.75 
 
 
295 aa  431  1e-120  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011371  Rleg2_6467  binding-protein-dependent transport systems inner membrane component  77.43 
 
 
288 aa  427  1e-119  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3979  binding-protein-dependent transport systems inner membrane component  77 
 
 
288 aa  425  1e-118  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.774682  n/a   
 
 
-
 
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  71.43 
 
 
300 aa  425  1e-118  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  70.71 
 
 
300 aa  424  1e-117  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_009952  Dshi_3130  sugar ABC transporter  70.63 
 
 
287 aa  418  1e-116  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.199935  normal 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  69.01 
 
 
287 aa  419  1e-116  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  68.42 
 
 
288 aa  417  9.999999999999999e-116  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  67.25 
 
 
288 aa  412  1e-114  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_008044  TM1040_2419  binding-protein-dependent transport systems inner membrane component  69.93 
 
 
287 aa  413  1e-114  Ruegeria sp. TM1040  Bacteria  normal  0.0339831  normal  0.708038 
 
 
-
 
NC_009654  Mmwyl1_0378  binding-protein-dependent transport systems inner membrane component  69.23 
 
 
289 aa  411  1e-114  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.374206 
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  67.6 
 
 
287 aa  414  1e-114  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  66.43 
 
 
303 aa  409  1e-113  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_004578  PSPTO_3738  ABC transporter, permease protein  67.36 
 
 
288 aa  410  1e-113  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.482953  n/a   
 
 
-
 
NC_007005  Psyr_1739  binding-protein dependent transport system inner membrane protein  67.36 
 
 
288 aa  410  1e-113  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  66.43 
 
 
288 aa  408  1e-113  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  70.83 
 
 
319 aa  394  1e-109  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2092  binding-protein-dependent transport systems inner membrane component  65.05 
 
 
292 aa  387  1e-107  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3172  ABC sugar (glycerol) transporter binding protein inner membrane protein  66.9 
 
 
286 aa  389  1e-107  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  66.55 
 
 
296 aa  387  1e-106  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  66.55 
 
 
296 aa  387  1e-106  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_003295  RSc3048  sugar-phosphate transmembrane ABC transporter protein  65.14 
 
 
296 aa  380  1e-104  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.071315 
 
 
-
 
NC_013440  Hoch_5938  binding-protein-dependent transport systems inner membrane component  64.77 
 
 
294 aa  378  1e-104  Haliangium ochraceum DSM 14365  Bacteria  normal  0.776913  normal 
 
 
-
 
NC_007347  Reut_A2207  binding-protein dependent transport system inner membrane protein  65.64 
 
 
294 aa  367  1e-101  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1442  binding-protein-dependent transport systems inner membrane component  64.01 
 
 
289 aa  370  1e-101  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0523794  n/a   
 
 
-
 
NC_012791  Vapar_3394  binding-protein-dependent transport systems inner membrane component  64.46 
 
 
296 aa  367  1e-100  Variovorax paradoxus S110  Bacteria  normal  0.391737  n/a   
 
 
-
 
NC_008752  Aave_0606  binding-protein-dependent transport systems inner membrane component  67.05 
 
 
298 aa  364  1e-100  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5369  binding-protein-dependent transport systems inner membrane component  66.92 
 
 
297 aa  367  1e-100  Burkholderia phymatum STM815  Bacteria  normal  normal  0.469601 
 
 
-
 
NC_007973  Rmet_2232  binding-protein-dependent transport systems inner membrane component  65.48 
 
 
294 aa  363  1e-99  Cupriavidus metallidurans CH34  Bacteria  normal  0.0344398  normal  0.169998 
 
 
-
 
NC_010676  Bphyt_6727  binding-protein-dependent transport systems inner membrane component  66.54 
 
 
298 aa  363  1e-99  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2320  binding-protein-dependent transport systems inner membrane component  63.76 
 
 
298 aa  363  1e-99  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.292517  normal  0.792602 
 
 
-
 
NC_011992  Dtpsy_0378  binding-protein-dependent transport systems inner membrane component  66.28 
 
 
298 aa  359  3e-98  Acidovorax ebreus TPSY  Bacteria  normal  0.0188782  n/a   
 
 
-
 
NC_007908  Rfer_3674  binding-protein-dependent transport systems inner membrane component  62.02 
 
 
297 aa  352  2.9999999999999997e-96  Rhodoferax ferrireducens T118  Bacteria  normal  0.0834675  n/a   
 
 
-
 
NC_010002  Daci_1027  binding-protein-dependent transport systems inner membrane component  64.11 
 
 
297 aa  352  5e-96  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_0480  binding-protein-dependent transport systems inner membrane component  65.16 
 
 
296 aa  347  1e-94  Polaromonas sp. JS666  Bacteria  normal  0.0207202  normal 
 
 
-
 
NC_008782  Ajs_0386  binding-protein-dependent transport systems inner membrane component  65.9 
 
 
298 aa  346  2e-94  Acidovorax sp. JS42  Bacteria  normal  0.675577  normal 
 
 
-
 
NC_013223  Dret_2098  binding-protein-dependent transport systems inner membrane component  49.83 
 
 
289 aa  306  2.0000000000000002e-82  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0888929 
 
 
-
 
NC_007802  Jann_4106  binding-protein-dependent transport systems inner membrane component  44.44 
 
 
287 aa  228  7e-59  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  33.91 
 
 
435 aa  129  7.000000000000001e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  28.15 
 
 
427 aa  123  4e-27  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  30 
 
 
291 aa  121  9.999999999999999e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  27.24 
 
 
291 aa  121  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  27.24 
 
 
291 aa  120  1.9999999999999998e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  28.26 
 
 
314 aa  120  3e-26  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  31.23 
 
 
288 aa  117  3e-25  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  32.63 
 
 
289 aa  117  3e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_011661  Dtur_1742  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
292 aa  116  3.9999999999999997e-25  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
289 aa  116  5e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
309 aa  116  5e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
289 aa  116  5e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
289 aa  116  5e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  27.37 
 
 
312 aa  116  6e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  30.22 
 
 
280 aa  115  6e-25  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  33.62 
 
 
289 aa  114  2.0000000000000002e-24  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  27.37 
 
 
313 aa  114  2.0000000000000002e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  30.83 
 
 
308 aa  113  4.0000000000000004e-24  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  29.72 
 
 
310 aa  112  7.000000000000001e-24  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
304 aa  111  1.0000000000000001e-23  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  33.96 
 
 
300 aa  111  1.0000000000000001e-23  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
318 aa  111  1.0000000000000001e-23  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  33.49 
 
 
289 aa  111  1.0000000000000001e-23  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  28.83 
 
 
313 aa  111  2.0000000000000002e-23  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
311 aa  110  2.0000000000000002e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_012880  Dd703_3169  binding-protein-dependent transport systems inner membrane component  34.44 
 
 
290 aa  110  3e-23  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  27.46 
 
 
312 aa  110  3e-23  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  28.23 
 
 
322 aa  110  4.0000000000000004e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  30.66 
 
 
318 aa  108  7.000000000000001e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0953  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
292 aa  108  1e-22  Rhodoferax ferrireducens T118  Bacteria  normal  0.568052  n/a   
 
 
-
 
NC_007948  Bpro_0700  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
336 aa  108  1e-22  Polaromonas sp. JS666  Bacteria  normal  0.788363  normal 
 
 
-
 
NC_013169  Ksed_20480  carbohydrate ABC transporter membrane protein  29.55 
 
 
318 aa  108  1e-22  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0521728  normal  0.389193 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  32.3 
 
 
307 aa  108  1e-22  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  31.51 
 
 
306 aa  107  2e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_013739  Cwoe_0172  binding-protein-dependent transport systems inner membrane component  30.6 
 
 
324 aa  107  2e-22  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  29.22 
 
 
286 aa  107  3e-22  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_013923  Nmag_3872  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
315 aa  106  4e-22  Natrialba magadii ATCC 43099  Archaea  normal  0.0566045  n/a   
 
 
-
 
NC_012912  Dd1591_3241  binding-protein-dependent transport systems inner membrane component  34.83 
 
 
290 aa  106  4e-22  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  28.22 
 
 
298 aa  106  5e-22  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  26.41 
 
 
292 aa  106  5e-22  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  26.46 
 
 
315 aa  106  5e-22  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  30.17 
 
 
293 aa  106  6e-22  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  31.21 
 
 
294 aa  105  7e-22  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3349  binding-protein-dependent transport systems inner membrane component  29.03 
 
 
291 aa  104  1e-21  Variovorax paradoxus S110  Bacteria  normal  0.230089  n/a   
 
 
-
 
NC_009664  Krad_4016  binding-protein-dependent transport systems inner membrane component  28.48 
 
 
338 aa  104  2e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0789775 
 
 
-
 
NC_012848  Rleg_4708  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
293 aa  104  2e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  30.88 
 
 
309 aa  104  2e-21  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_009664  Krad_4401  binding-protein-dependent transport systems inner membrane component  27.44 
 
 
316 aa  103  3e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_012028  Hlac_2863  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
356 aa  103  3e-21  Halorubrum lacusprofundi ATCC 49239  Archaea  n/a    n/a   
 
 
-
 
NC_011369  Rleg2_3621  binding-protein-dependent transport systems inner membrane component  28.69 
 
 
305 aa  103  3e-21  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.980812  normal 
 
 
-
 
NC_009675  Anae109_1696  binding-protein-dependent transport systems inner membrane component  37.1 
 
 
291 aa  103  4e-21  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00180742  normal 
 
 
-
 
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