Gene TM1040_2419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2419 
Symbol 
ID4076745 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2560570 
End bp2561433 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content57% 
IMG OID638007741 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_614413 
Protein GI99082259 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1175] ABC-type sugar transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0339831 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.708038 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACCG AAAATCAAAA AGCCTGGTTC TTTGTGCTGC CGGTCCTGCT GCTGGTGGCT 
TTCAACGCGC TCATTCCGAT GATGACCGTC GTCAACTACT CCGTACAGGA GACCTTTGGG
GACAACGTGT TTTTCTGGCA GGGTCTGGAC TGGTTCCAGC AGATCCTGCG TTCGGACCGT
TTCCATGCCG CGCTGGGGCG TCAGTTCCTC TTCACCTTCC TGATCCTCAT TATCGAGGTG
CCGCTTGGTA TCGCCATTGC GCTCTCCATG CCGCGCAAGG GGTTCTGGGT ACCGGTTTGC
CTCGTGCTGA TGGCGCTGCC GATGCTCATT CCGTGGAACG TGGTTGGTGC AATGTGGAAC
ATCTTCACCC TTCCTGACAT CGGCCTGCTT GGCTATTTTC TGAACCATGT GCTCGGCATC
AACTACGACA TGACCCAAGA TCCGGTCGCG GCATGGGTGA CCATTGTCAC CATGGACGTG
TGGCACTGGA CCTCACTTGT GGTGCTTCTG TCCTACGCCG GTCTCGTGTC GATCCCAGAC
GCCTATTATC AGGCAGCCAA GATCGACGGC GCGTCCAACT GGTCCGTGTT CCGCTACATC
CAGCTGCCGA AGATGAAGAC GGTTCTGACC ATCGCGATCC TGTTGCGGTT CATGGACAGC
TTCAACATCT ACACCGAGCC CTTCGTGCTC ACCGGCGGTG GTCCCGGCAA CTCCACCACG
CTCCTGTCGA TCGACCTTGT GAAGATCGCA CTTGGGCAGT TCGACCTCGG CCCCGCCGCC
GCGATGTCGC TCATCTACTT TGCAATCACG CTTCTGGTCA GCTGGCTGTT CTACACGCTG
ATGACCAAAG ACGACCAGAA CTAA
 
Protein sequence
MKTENQKAWF FVLPVLLLVA FNALIPMMTV VNYSVQETFG DNVFFWQGLD WFQQILRSDR 
FHAALGRQFL FTFLILIIEV PLGIAIALSM PRKGFWVPVC LVLMALPMLI PWNVVGAMWN
IFTLPDIGLL GYFLNHVLGI NYDMTQDPVA AWVTIVTMDV WHWTSLVVLL SYAGLVSIPD
AYYQAAKIDG ASNWSVFRYI QLPKMKTVLT IAILLRFMDS FNIYTEPFVL TGGGPGNSTT
LLSIDLVKIA LGQFDLGPAA AMSLIYFAIT LLVSWLFYTL MTKDDQN