Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2419 |
Symbol | |
ID | 4076745 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2560570 |
End bp | 2561433 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638007741 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_614413 |
Protein GI | 99082259 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1175] ABC-type sugar transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0339831 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.708038 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCG AAAATCAAAA AGCCTGGTTC TTTGTGCTGC CGGTCCTGCT GCTGGTGGCT TTCAACGCGC TCATTCCGAT GATGACCGTC GTCAACTACT CCGTACAGGA GACCTTTGGG GACAACGTGT TTTTCTGGCA GGGTCTGGAC TGGTTCCAGC AGATCCTGCG TTCGGACCGT TTCCATGCCG CGCTGGGGCG TCAGTTCCTC TTCACCTTCC TGATCCTCAT TATCGAGGTG CCGCTTGGTA TCGCCATTGC GCTCTCCATG CCGCGCAAGG GGTTCTGGGT ACCGGTTTGC CTCGTGCTGA TGGCGCTGCC GATGCTCATT CCGTGGAACG TGGTTGGTGC AATGTGGAAC ATCTTCACCC TTCCTGACAT CGGCCTGCTT GGCTATTTTC TGAACCATGT GCTCGGCATC AACTACGACA TGACCCAAGA TCCGGTCGCG GCATGGGTGA CCATTGTCAC CATGGACGTG TGGCACTGGA CCTCACTTGT GGTGCTTCTG TCCTACGCCG GTCTCGTGTC GATCCCAGAC GCCTATTATC AGGCAGCCAA GATCGACGGC GCGTCCAACT GGTCCGTGTT CCGCTACATC CAGCTGCCGA AGATGAAGAC GGTTCTGACC ATCGCGATCC TGTTGCGGTT CATGGACAGC TTCAACATCT ACACCGAGCC CTTCGTGCTC ACCGGCGGTG GTCCCGGCAA CTCCACCACG CTCCTGTCGA TCGACCTTGT GAAGATCGCA CTTGGGCAGT TCGACCTCGG CCCCGCCGCC GCGATGTCGC TCATCTACTT TGCAATCACG CTTCTGGTCA GCTGGCTGTT CTACACGCTG ATGACCAAAG ACGACCAGAA CTAA
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Protein sequence | MKTENQKAWF FVLPVLLLVA FNALIPMMTV VNYSVQETFG DNVFFWQGLD WFQQILRSDR FHAALGRQFL FTFLILIIEV PLGIAIALSM PRKGFWVPVC LVLMALPMLI PWNVVGAMWN IFTLPDIGLL GYFLNHVLGI NYDMTQDPVA AWVTIVTMDV WHWTSLVVLL SYAGLVSIPD AYYQAAKIDG ASNWSVFRYI QLPKMKTVLT IAILLRFMDS FNIYTEPFVL TGGGPGNSTT LLSIDLVKIA LGQFDLGPAA AMSLIYFAIT LLVSWLFYTL MTKDDQN
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