| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2098 |
|---|
| Symbol | |
|---|
| ID | 8419948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | - |
|---|
| Start bp | 2387076 |
|---|
| End bp | 2387945 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 645038691 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003198960 |
|---|
| Protein GI | 258406218 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0888929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCAGG GCATGAAGAA CAGGGCGTGG CTCTTTCTGG TTCCAGCACT GGTTTTGATG
GCCATCAGCG CGTTTATTCC GCTGATGACC GTCATCAATT ACTCACTTCA CTATATTTTT
GCCGGTTCAG CGCCGACCTT CGTGGGGTTT GAGAATTATG CCGAGGTCTT GCAGGACCCG
GCCTTTCAAG GCGCCCTGGT CCGGCAGCTT GTTTTCAGCT CTCTGGTTTT GCTGGTGGAG
GTCCCCCTGG GGGTCATGGT GGCTTTGGCC ATGCCCAAGA GGGGCCCGTG GGTCGCGGTC
TGTCTGGTCC TGTTAGGCAT CCCCCTGCTG ATCCCGTTCA ATGTGGTCGG GATCATCGCC
AGGTTGTTCA CCCAGGCCTC CATCGGTGTT ATCCCGGCCC TGTGTGAACT GGTCGGTTAC
AATTTCAATG TGGCCCTGGA TCCTATTGAT GCATCCCTGA CGGTGTTCTT GATCGATGTC
TGGCATTGGA CCCCGCTGGT GGTGCTGTTG TGTTACGCTG GCCTGCAGGC CATCCCCGAC
GCCTACTATC AGGCCGCTCA AATCGATGGG GCCTCGACCT GGCAGACATT CCGGTATGTG
ACCCTGCCCA AGCTCCGCCC CGTATTGATT ATAGGTGTGC TGCTCAGATT TATGGATTCC
TTTAAGATCT ATGCCGAGCC CCTGCTCTTG ACCGGCGGCG GGCCAGGGAG TTCGACGACG
TTTTTGAGCC TGCACGTGGC CCGGAAGGCC GAATCGTATG AACTCGGCTA CGCCGGTGCG
TCATCTATTA TTTATCTGTT TATCGTCATT GTTCTCAGTT TTATTTTCTT CCAACTCATG
AGCAATATCG GCAAAGGGGA GCAGAAATGA
|
|---|
| Protein sequence | MGQGMKNRAW LFLVPALVLM AISAFIPLMT VINYSLHYIF AGSAPTFVGF ENYAEVLQDP
AFQGALVRQL VFSSLVLLVE VPLGVMVALA MPKRGPWVAV CLVLLGIPLL IPFNVVGIIA
RLFTQASIGV IPALCELVGY NFNVALDPID ASLTVFLIDV WHWTPLVVLL CYAGLQAIPD
AYYQAAQIDG ASTWQTFRYV TLPKLRPVLI IGVLLRFMDS FKIYAEPLLL TGGGPGSSTT
FLSLHVARKA ESYELGYAGA SSIIYLFIVI VLSFIFFQLM SNIGKGEQK
|
|---|
| |