More than 300 homologs were found in PanDaTox collection
for query gene Ping_3172 on replicon NC_008709
Organism: Psychromonas ingrahamii 37



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008709  Ping_3172  ABC sugar (glycerol) transporter binding protein inner membrane protein  100 
 
 
286 aa  573  1.0000000000000001e-162  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  77.82 
 
 
287 aa  471  1e-132  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  77 
 
 
288 aa  468  1.0000000000000001e-131  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_004578  PSPTO_3738  ABC transporter, permease protein  73.61 
 
 
288 aa  454  1e-127  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.482953  n/a   
 
 
-
 
NC_007005  Psyr_1739  binding-protein dependent transport system inner membrane protein  73.61 
 
 
288 aa  454  1e-127  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  73.78 
 
 
303 aa  447  1e-125  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  73.52 
 
 
288 aa  447  1e-125  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  73.52 
 
 
287 aa  447  1e-125  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  73.78 
 
 
288 aa  446  1.0000000000000001e-124  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_009654  Mmwyl1_0378  binding-protein-dependent transport systems inner membrane component  71.17 
 
 
289 aa  431  1e-120  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.374206 
 
 
-
 
NC_007493  RSP_2666  ABC sugar (glycerol) transporter, inner membrane subunit  67.6 
 
 
290 aa  409  1e-113  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1324  binding-protein-dependent transport systems inner membrane component  67.6 
 
 
290 aa  409  1e-113  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2092  binding-protein-dependent transport systems inner membrane component  67.59 
 
 
292 aa  405  1.0000000000000001e-112  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4390  binding-protein-dependent transport systems inner membrane component  68.64 
 
 
295 aa  400  9.999999999999999e-111  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.117002 
 
 
-
 
NC_013440  Hoch_5938  binding-protein-dependent transport systems inner membrane component  67.13 
 
 
294 aa  397  1e-109  Haliangium ochraceum DSM 14365  Bacteria  normal  0.776913  normal 
 
 
-
 
NC_003295  RSc3048  sugar-phosphate transmembrane ABC transporter protein  67.84 
 
 
296 aa  393  1e-108  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.071315 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  67.48 
 
 
296 aa  393  1e-108  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  67.48 
 
 
296 aa  393  1e-108  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1205  binding-protein-dependent transport systems inner membrane component  66.9 
 
 
290 aa  393  1e-108  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.997435 
 
 
-
 
NC_007802  Jann_4102  binding-protein-dependent transport systems inner membrane component  63.41 
 
 
290 aa  384  1e-106  Jannaschia sp. CCS1  Bacteria  normal  0.414832  normal  0.309443 
 
 
-
 
NC_012852  Rleg_5980  binding-protein-dependent transport systems inner membrane component  66.2 
 
 
288 aa  382  1e-105  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  66.21 
 
 
300 aa  383  1e-105  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  65.19 
 
 
300 aa  380  1e-104  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  65.62 
 
 
300 aa  380  1e-104  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  65.53 
 
 
300 aa  379  1e-104  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_011989  Avi_0097  ABC transporter membrane spanning protein (sugar)  68.99 
 
 
295 aa  375  1e-103  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  65.19 
 
 
300 aa  377  1e-103  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_010623  Bphy_5369  binding-protein-dependent transport systems inner membrane component  68.82 
 
 
297 aa  377  1e-103  Burkholderia phymatum STM815  Bacteria  normal  normal  0.469601 
 
 
-
 
NC_009636  Smed_2906  binding-protein-dependent transport systems inner membrane component  66.2 
 
 
288 aa  374  1e-102  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6727  binding-protein-dependent transport systems inner membrane component  68.06 
 
 
298 aa  373  1e-102  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2207  binding-protein dependent transport system inner membrane protein  66.55 
 
 
294 aa  369  1e-101  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1442  binding-protein-dependent transport systems inner membrane component  65.84 
 
 
289 aa  368  1e-101  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0523794  n/a   
 
 
-
 
NC_011371  Rleg2_6467  binding-protein-dependent transport systems inner membrane component  67.25 
 
 
288 aa  366  1e-100  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2419  binding-protein-dependent transport systems inner membrane component  62.59 
 
 
287 aa  365  1e-100  Ruegeria sp. TM1040  Bacteria  normal  0.0339831  normal  0.708038 
 
 
-
 
NC_009952  Dshi_3130  sugar ABC transporter  62.59 
 
 
287 aa  366  1e-100  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.199935  normal 
 
 
-
 
NC_009668  Oant_3979  binding-protein-dependent transport systems inner membrane component  66.55 
 
 
288 aa  363  2e-99  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.774682  n/a   
 
 
-
 
NC_012791  Vapar_3394  binding-protein-dependent transport systems inner membrane component  67.02 
 
 
296 aa  363  2e-99  Variovorax paradoxus S110  Bacteria  normal  0.391737  n/a   
 
 
-
 
NC_008254  Meso_1594  binding-protein-dependent transport systems inner membrane component  67.13 
 
 
288 aa  362  6e-99  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2232  binding-protein-dependent transport systems inner membrane component  65.49 
 
 
294 aa  361  8e-99  Cupriavidus metallidurans CH34  Bacteria  normal  0.0344398  normal  0.169998 
 
 
-
 
NC_008752  Aave_0606  binding-protein-dependent transport systems inner membrane component  66.67 
 
 
298 aa  359  4e-98  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0378  binding-protein-dependent transport systems inner membrane component  67.43 
 
 
298 aa  358  4e-98  Acidovorax ebreus TPSY  Bacteria  normal  0.0188782  n/a   
 
 
-
 
NC_010002  Daci_1027  binding-protein-dependent transport systems inner membrane component  68.2 
 
 
297 aa  354  1e-96  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  63.89 
 
 
319 aa  353  2e-96  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3674  binding-protein-dependent transport systems inner membrane component  67.43 
 
 
297 aa  352  4e-96  Rhodoferax ferrireducens T118  Bacteria  normal  0.0834675  n/a   
 
 
-
 
NC_008786  Veis_2320  binding-protein-dependent transport systems inner membrane component  64.41 
 
 
298 aa  349  3e-95  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.292517  normal  0.792602 
 
 
-
 
NC_007948  Bpro_0480  binding-protein-dependent transport systems inner membrane component  67.05 
 
 
296 aa  341  1e-92  Polaromonas sp. JS666  Bacteria  normal  0.0207202  normal 
 
 
-
 
NC_008782  Ajs_0386  binding-protein-dependent transport systems inner membrane component  66.67 
 
 
298 aa  338  7e-92  Acidovorax sp. JS42  Bacteria  normal  0.675577  normal 
 
 
-
 
NC_013223  Dret_2098  binding-protein-dependent transport systems inner membrane component  53.79 
 
 
289 aa  312  3.9999999999999997e-84  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0888929 
 
 
-
 
NC_007802  Jann_4106  binding-protein-dependent transport systems inner membrane component  44.06 
 
 
287 aa  219  3e-56  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  30.24 
 
 
291 aa  131  2.0000000000000002e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  29.37 
 
 
314 aa  125  7e-28  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  32.54 
 
 
288 aa  123  4e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  32.66 
 
 
435 aa  122  5e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
313 aa  120  1.9999999999999998e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  30.45 
 
 
311 aa  119  4.9999999999999996e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  26.83 
 
 
322 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
289 aa  117  1.9999999999999998e-25  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  27.64 
 
 
280 aa  116  3.9999999999999997e-25  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  32.46 
 
 
289 aa  116  3.9999999999999997e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  32.46 
 
 
289 aa  116  3.9999999999999997e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  32.46 
 
 
289 aa  116  3.9999999999999997e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  31.49 
 
 
289 aa  116  5e-25  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  28.21 
 
 
427 aa  116  5e-25  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
291 aa  115  7.999999999999999e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
291 aa  115  1.0000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  32.02 
 
 
289 aa  115  1.0000000000000001e-24  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  32.17 
 
 
280 aa  114  2.0000000000000002e-24  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
286 aa  114  2.0000000000000002e-24  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  31.36 
 
 
294 aa  114  2.0000000000000002e-24  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3241  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
290 aa  113  3e-24  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
299 aa  113  4.0000000000000004e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  29.11 
 
 
318 aa  113  4.0000000000000004e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  28.12 
 
 
318 aa  112  5e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_15030  binding-protein-dependent transport systems inner membrane component  29.75 
 
 
289 aa  113  5e-24  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4941  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
309 aa  112  6e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3408  binding-protein-dependent transport systems inner membrane component  29.14 
 
 
293 aa  112  7.000000000000001e-24  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00259426  n/a   
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  32.17 
 
 
286 aa  112  7.000000000000001e-24  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  27.46 
 
 
298 aa  112  8.000000000000001e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_007908  Rfer_0953  binding-protein-dependent transport systems inner membrane component  29.73 
 
 
292 aa  112  9e-24  Rhodoferax ferrireducens T118  Bacteria  normal  0.568052  n/a   
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  26.79 
 
 
308 aa  111  2.0000000000000002e-23  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  29.06 
 
 
292 aa  109  5e-23  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
310 aa  109  5e-23  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_4401  binding-protein-dependent transport systems inner membrane component  27.08 
 
 
316 aa  108  1e-22  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  28.68 
 
 
310 aa  108  1e-22  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  29.44 
 
 
300 aa  107  2e-22  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  30.83 
 
 
295 aa  107  2e-22  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  27.94 
 
 
309 aa  107  2e-22  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_013595  Sros_6585  lactose transport system (permease)  31.14 
 
 
306 aa  107  2e-22  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  25 
 
 
312 aa  107  2e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  29.08 
 
 
294 aa  107  2e-22  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  24.82 
 
 
313 aa  106  5e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  26.64 
 
 
309 aa  106  6e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
306 aa  104  1e-21  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_009485  BBta_3226  putative sugar ABC transporter, permease protein  28.57 
 
 
310 aa  104  1e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0290776  normal  0.498538 
 
 
-
 
NC_014212  Mesil_1016  binding-protein-dependent transport systems inner membrane component  27.11 
 
 
301 aa  105  1e-21  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1127  binding-protein-dependent transport systems inner membrane component  26.79 
 
 
328 aa  105  1e-21  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.190953  hitchhiker  0.00155627 
 
 
-
 
NC_011992  Dtpsy_0790  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
293 aa  104  1e-21  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1114  binding-protein-dependent transport systems inner membrane component  25 
 
 
319 aa  104  2e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.32149  normal  0.356013 
 
 
-
 
NC_008782  Ajs_0861  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
293 aa  104  2e-21  Acidovorax sp. JS42  Bacteria  normal  normal  0.533828 
 
 
-
 
NC_013947  Snas_4077  binding-protein-dependent transport systems inner membrane component  26.32 
 
 
317 aa  103  3e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.140823  normal  0.731226 
 
 
-
 
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