More than 300 homologs were found in PanDaTox collection
for query gene Dshi_3130 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_3130  sugar ABC transporter  100 
 
 
287 aa  579  1e-164  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.199935  normal 
 
 
-
 
NC_008044  TM1040_2419  binding-protein-dependent transport systems inner membrane component  89.47 
 
 
287 aa  527  1e-149  Ruegeria sp. TM1040  Bacteria  normal  0.0339831  normal  0.708038 
 
 
-
 
NC_012852  Rleg_5980  binding-protein-dependent transport systems inner membrane component  74.13 
 
 
288 aa  424  1e-118  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2666  ABC sugar (glycerol) transporter, inner membrane subunit  71.68 
 
 
290 aa  419  1e-116  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1324  binding-protein-dependent transport systems inner membrane component  71.68 
 
 
290 aa  419  1e-116  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011371  Rleg2_6467  binding-protein-dependent transport systems inner membrane component  75.52 
 
 
288 aa  412  1e-114  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2906  binding-protein-dependent transport systems inner membrane component  73.43 
 
 
288 aa  410  1e-113  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1205  binding-protein-dependent transport systems inner membrane component  70.63 
 
 
290 aa  404  1.0000000000000001e-112  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.997435 
 
 
-
 
NC_009668  Oant_3979  binding-protein-dependent transport systems inner membrane component  73.43 
 
 
288 aa  402  1e-111  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.774682  n/a   
 
 
-
 
NC_011989  Avi_0097  ABC transporter membrane spanning protein (sugar)  73.08 
 
 
295 aa  400  9.999999999999999e-111  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4390  binding-protein-dependent transport systems inner membrane component  70.42 
 
 
295 aa  400  9.999999999999999e-111  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.117002 
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  67.6 
 
 
300 aa  395  1e-109  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  67.94 
 
 
300 aa  394  1e-109  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_008254  Meso_1594  binding-protein-dependent transport systems inner membrane component  73.14 
 
 
288 aa  395  1e-109  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_4102  binding-protein-dependent transport systems inner membrane component  66.78 
 
 
290 aa  391  1e-108  Jannaschia sp. CCS1  Bacteria  normal  0.414832  normal  0.309443 
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  67.25 
 
 
300 aa  390  1e-108  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  67.25 
 
 
300 aa  389  1e-107  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  67.94 
 
 
300 aa  390  1e-107  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_004578  PSPTO_3738  ABC transporter, permease protein  62.59 
 
 
288 aa  383  1e-105  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.482953  n/a   
 
 
-
 
NC_007005  Psyr_1739  binding-protein dependent transport system inner membrane protein  62.59 
 
 
288 aa  383  1e-105  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  63.51 
 
 
287 aa  383  1e-105  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  67.6 
 
 
319 aa  374  1e-103  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  64.08 
 
 
303 aa  373  1e-102  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  61.54 
 
 
288 aa  371  1e-102  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  64.08 
 
 
288 aa  371  1e-102  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  63.38 
 
 
287 aa  369  1e-101  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  64.08 
 
 
288 aa  370  1e-101  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_009654  Mmwyl1_0378  binding-protein-dependent transport systems inner membrane component  61.67 
 
 
289 aa  358  7e-98  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.374206 
 
 
-
 
NC_013440  Hoch_5938  binding-protein-dependent transport systems inner membrane component  59.57 
 
 
294 aa  353  2e-96  Haliangium ochraceum DSM 14365  Bacteria  normal  0.776913  normal 
 
 
-
 
NC_008709  Ping_3172  ABC sugar (glycerol) transporter binding protein inner membrane protein  62.59 
 
 
286 aa  347  1e-94  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2092  binding-protein-dependent transport systems inner membrane component  59.17 
 
 
292 aa  344  8e-94  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc3048  sugar-phosphate transmembrane ABC transporter protein  60.99 
 
 
296 aa  340  1e-92  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.071315 
 
 
-
 
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  60.64 
 
 
296 aa  340  2e-92  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  60.64 
 
 
296 aa  340  2e-92  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_013173  Dbac_1442  binding-protein-dependent transport systems inner membrane component  62.82 
 
 
289 aa  333  2e-90  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0523794  n/a   
 
 
-
 
NC_010676  Bphyt_6727  binding-protein-dependent transport systems inner membrane component  61.83 
 
 
298 aa  328  5.0000000000000004e-89  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5369  binding-protein-dependent transport systems inner membrane component  61.07 
 
 
297 aa  325  6e-88  Burkholderia phymatum STM815  Bacteria  normal  normal  0.469601 
 
 
-
 
NC_012791  Vapar_3394  binding-protein-dependent transport systems inner membrane component  60.99 
 
 
296 aa  323  2e-87  Variovorax paradoxus S110  Bacteria  normal  0.391737  n/a   
 
 
-
 
NC_008752  Aave_0606  binding-protein-dependent transport systems inner membrane component  61.07 
 
 
298 aa  322  5e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2232  binding-protein-dependent transport systems inner membrane component  59.01 
 
 
294 aa  320  1.9999999999999998e-86  Cupriavidus metallidurans CH34  Bacteria  normal  0.0344398  normal  0.169998 
 
 
-
 
NC_008786  Veis_2320  binding-protein-dependent transport systems inner membrane component  59.22 
 
 
298 aa  318  5e-86  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.292517  normal  0.792602 
 
 
-
 
NC_007347  Reut_A2207  binding-protein dependent transport system inner membrane protein  59.01 
 
 
294 aa  318  7.999999999999999e-86  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0378  binding-protein-dependent transport systems inner membrane component  60.69 
 
 
298 aa  317  2e-85  Acidovorax ebreus TPSY  Bacteria  normal  0.0188782  n/a   
 
 
-
 
NC_007908  Rfer_3674  binding-protein-dependent transport systems inner membrane component  60.08 
 
 
297 aa  313  1.9999999999999998e-84  Rhodoferax ferrireducens T118  Bacteria  normal  0.0834675  n/a   
 
 
-
 
NC_010002  Daci_1027  binding-protein-dependent transport systems inner membrane component  60.84 
 
 
297 aa  310  2e-83  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0386  binding-protein-dependent transport systems inner membrane component  60.31 
 
 
298 aa  306  2.0000000000000002e-82  Acidovorax sp. JS42  Bacteria  normal  0.675577  normal 
 
 
-
 
NC_007948  Bpro_0480  binding-protein-dependent transport systems inner membrane component  61.45 
 
 
296 aa  304  1.0000000000000001e-81  Polaromonas sp. JS666  Bacteria  normal  0.0207202  normal 
 
 
-
 
NC_013223  Dret_2098  binding-protein-dependent transport systems inner membrane component  49.1 
 
 
289 aa  291  1e-77  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0888929 
 
 
-
 
NC_007802  Jann_4106  binding-protein-dependent transport systems inner membrane component  41.55 
 
 
287 aa  202  5e-51  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  29.27 
 
 
291 aa  139  4.999999999999999e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  28.83 
 
 
291 aa  134  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  27.7 
 
 
314 aa  133  3e-30  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  28.47 
 
 
291 aa  132  5e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
308 aa  128  9.000000000000001e-29  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
427 aa  127  2.0000000000000002e-28  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  35.43 
 
 
289 aa  124  1e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  29.24 
 
 
280 aa  124  2e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
289 aa  123  3e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
289 aa  123  3e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
289 aa  123  3e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  34.77 
 
 
289 aa  123  4e-27  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
289 aa  122  7e-27  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  33.02 
 
 
311 aa  120  3e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  32.01 
 
 
318 aa  120  3.9999999999999996e-26  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  32.22 
 
 
435 aa  119  6e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012853  Rleg_5697  binding-protein-dependent transport systems inner membrane component  32.1 
 
 
305 aa  119  7e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.121734 
 
 
-
 
NC_007908  Rfer_0953  binding-protein-dependent transport systems inner membrane component  30.48 
 
 
292 aa  118  9.999999999999999e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.568052  n/a   
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  32.12 
 
 
318 aa  118  9.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  29.86 
 
 
322 aa  118  9.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  29.89 
 
 
312 aa  117  3e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  26.24 
 
 
313 aa  115  6.9999999999999995e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  26.32 
 
 
312 aa  115  7.999999999999999e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  26.71 
 
 
318 aa  115  1.0000000000000001e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  35.32 
 
 
309 aa  115  1.0000000000000001e-24  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  30.45 
 
 
294 aa  114  2.0000000000000002e-24  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
295 aa  114  2.0000000000000002e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  31.65 
 
 
288 aa  114  2.0000000000000002e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  28.62 
 
 
298 aa  113  4.0000000000000004e-24  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  37.22 
 
 
304 aa  112  5e-24  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
313 aa  112  6e-24  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
300 aa  112  9e-24  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  29.54 
 
 
299 aa  112  9e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  27.3 
 
 
309 aa  111  1.0000000000000001e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_012791  Vapar_3349  binding-protein-dependent transport systems inner membrane component  30.27 
 
 
291 aa  110  2.0000000000000002e-23  Variovorax paradoxus S110  Bacteria  normal  0.230089  n/a   
 
 
-
 
NC_013947  Snas_4077  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
317 aa  108  8.000000000000001e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.140823  normal  0.731226 
 
 
-
 
NC_009664  Krad_4016  binding-protein-dependent transport systems inner membrane component  29.87 
 
 
338 aa  108  1e-22  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0789775 
 
 
-
 
NC_008148  Rxyl_0068  binding-protein-dependent transport systems inner membrane component  26.54 
 
 
306 aa  108  1e-22  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  28.33 
 
 
306 aa  107  2e-22  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_014212  Mesil_3057  binding-protein-dependent transport systems inner membrane component  26.74 
 
 
290 aa  107  2e-22  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  26.83 
 
 
312 aa  107  2e-22  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  30 
 
 
315 aa  107  2e-22  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  25.18 
 
 
312 aa  107  3e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_010465  YPK_3708  binding-protein-dependent transport systems inner membrane component  25.26 
 
 
294 aa  106  4e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3574  carbohydrate ABC transporter permease  25.26 
 
 
294 aa  106  4e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4941  binding-protein-dependent transport systems inner membrane component  27.08 
 
 
309 aa  106  5e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_1127  binding-protein-dependent transport systems inner membrane component  27.62 
 
 
328 aa  106  5e-22  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.190953  hitchhiker  0.00155627 
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  30.51 
 
 
287 aa  106  5e-22  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A4017  carbohydrate ABC transporter permease  25.26 
 
 
294 aa  105  6e-22  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0790  binding-protein-dependent transport systems inner membrane component  28.01 
 
 
293 aa  105  8e-22  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
292 aa  105  1e-21  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
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