More than 300 homologs were found in PanDaTox collection
for query gene TM1040_2419 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_2419  binding-protein-dependent transport systems inner membrane component  100 
 
 
287 aa  576  1.0000000000000001e-163  Ruegeria sp. TM1040  Bacteria  normal  0.0339831  normal  0.708038 
 
 
-
 
NC_009952  Dshi_3130  sugar ABC transporter  89.47 
 
 
287 aa  527  1e-149  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.199935  normal 
 
 
-
 
NC_012852  Rleg_5980  binding-protein-dependent transport systems inner membrane component  73.43 
 
 
288 aa  414  1e-114  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_2666  ABC sugar (glycerol) transporter, inner membrane subunit  69.23 
 
 
290 aa  410  1e-113  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1324  binding-protein-dependent transport systems inner membrane component  69.23 
 
 
290 aa  410  1e-113  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3979  binding-protein-dependent transport systems inner membrane component  74.13 
 
 
288 aa  401  1e-111  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.774682  n/a   
 
 
-
 
NC_009636  Smed_2906  binding-protein-dependent transport systems inner membrane component  73.43 
 
 
288 aa  402  1e-111  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_4102  binding-protein-dependent transport systems inner membrane component  67.83 
 
 
290 aa  397  9.999999999999999e-111  Jannaschia sp. CCS1  Bacteria  normal  0.414832  normal  0.309443 
 
 
-
 
NC_011371  Rleg2_6467  binding-protein-dependent transport systems inner membrane component  74.65 
 
 
288 aa  400  9.999999999999999e-111  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0097  ABC transporter membrane spanning protein (sugar)  75 
 
 
295 aa  395  1e-109  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1205  binding-protein-dependent transport systems inner membrane component  69.93 
 
 
290 aa  397  1e-109  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.997435 
 
 
-
 
NC_008254  Meso_1594  binding-protein-dependent transport systems inner membrane component  73.14 
 
 
288 aa  391  1e-108  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4390  binding-protein-dependent transport systems inner membrane component  68.18 
 
 
295 aa  392  1e-108  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.117002 
 
 
-
 
NC_004578  PSPTO_3738  ABC transporter, permease protein  64.69 
 
 
288 aa  390  1e-107  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.482953  n/a   
 
 
-
 
NC_007005  Psyr_1739  binding-protein dependent transport system inner membrane protein  64.69 
 
 
288 aa  390  1e-107  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  66.55 
 
 
300 aa  387  1e-107  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  64.46 
 
 
287 aa  389  1e-107  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  66.55 
 
 
300 aa  385  1e-106  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  66.2 
 
 
300 aa  385  1e-106  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  66.2 
 
 
300 aa  383  1e-105  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  66.55 
 
 
300 aa  384  1e-105  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  63.29 
 
 
303 aa  375  1e-103  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  63.64 
 
 
288 aa  375  1e-103  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  67.94 
 
 
319 aa  374  1e-103  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  62.94 
 
 
287 aa  372  1e-102  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  63.29 
 
 
288 aa  374  1e-102  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  63.29 
 
 
288 aa  373  1e-102  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_009654  Mmwyl1_0378  binding-protein-dependent transport systems inner membrane component  62.02 
 
 
289 aa  362  3e-99  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.374206 
 
 
-
 
NC_013440  Hoch_5938  binding-protein-dependent transport systems inner membrane component  59.22 
 
 
294 aa  354  1e-96  Haliangium ochraceum DSM 14365  Bacteria  normal  0.776913  normal 
 
 
-
 
NC_007963  Csal_2092  binding-protein-dependent transport systems inner membrane component  60.55 
 
 
292 aa  347  2e-94  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1442  binding-protein-dependent transport systems inner membrane component  64.26 
 
 
289 aa  346  2e-94  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0523794  n/a   
 
 
-
 
NC_008709  Ping_3172  ABC sugar (glycerol) transporter binding protein inner membrane protein  62.59 
 
 
286 aa  346  3e-94  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc3048  sugar-phosphate transmembrane ABC transporter protein  59.93 
 
 
296 aa  343  2.9999999999999997e-93  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.071315 
 
 
-
 
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  59.93 
 
 
296 aa  342  4e-93  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  59.93 
 
 
296 aa  342  4e-93  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_010676  Bphyt_6727  binding-protein-dependent transport systems inner membrane component  60.31 
 
 
298 aa  332  5e-90  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0606  binding-protein-dependent transport systems inner membrane component  61.45 
 
 
298 aa  328  7e-89  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5369  binding-protein-dependent transport systems inner membrane component  60.31 
 
 
297 aa  327  1.0000000000000001e-88  Burkholderia phymatum STM815  Bacteria  normal  normal  0.469601 
 
 
-
 
NC_012791  Vapar_3394  binding-protein-dependent transport systems inner membrane component  60.28 
 
 
296 aa  327  2.0000000000000001e-88  Variovorax paradoxus S110  Bacteria  normal  0.391737  n/a   
 
 
-
 
NC_008786  Veis_2320  binding-protein-dependent transport systems inner membrane component  58.87 
 
 
298 aa  322  4e-87  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.292517  normal  0.792602 
 
 
-
 
NC_011992  Dtpsy_0378  binding-protein-dependent transport systems inner membrane component  60.69 
 
 
298 aa  321  8e-87  Acidovorax ebreus TPSY  Bacteria  normal  0.0188782  n/a   
 
 
-
 
NC_007973  Rmet_2232  binding-protein-dependent transport systems inner membrane component  59.01 
 
 
294 aa  320  1.9999999999999998e-86  Cupriavidus metallidurans CH34  Bacteria  normal  0.0344398  normal  0.169998 
 
 
-
 
NC_007347  Reut_A2207  binding-protein dependent transport system inner membrane protein  58.66 
 
 
294 aa  318  7.999999999999999e-86  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3674  binding-protein-dependent transport systems inner membrane component  60.46 
 
 
297 aa  317  1e-85  Rhodoferax ferrireducens T118  Bacteria  normal  0.0834675  n/a   
 
 
-
 
NC_010002  Daci_1027  binding-protein-dependent transport systems inner membrane component  60.84 
 
 
297 aa  317  1e-85  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_0386  binding-protein-dependent transport systems inner membrane component  60.69 
 
 
298 aa  311  9e-84  Acidovorax sp. JS42  Bacteria  normal  0.675577  normal 
 
 
-
 
NC_007948  Bpro_0480  binding-protein-dependent transport systems inner membrane component  61.45 
 
 
296 aa  310  2e-83  Polaromonas sp. JS666  Bacteria  normal  0.0207202  normal 
 
 
-
 
NC_013223  Dret_2098  binding-protein-dependent transport systems inner membrane component  49.3 
 
 
289 aa  290  2e-77  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0888929 
 
 
-
 
NC_007802  Jann_4106  binding-protein-dependent transport systems inner membrane component  42.31 
 
 
287 aa  207  2e-52  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
291 aa  144  1e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
291 aa  144  2e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
291 aa  141  9.999999999999999e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  29.14 
 
 
314 aa  134  1.9999999999999998e-30  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  35.55 
 
 
289 aa  127  2.0000000000000002e-28  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
289 aa  126  4.0000000000000003e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
289 aa  126  4.0000000000000003e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
289 aa  126  4.0000000000000003e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_013595  Sros_3494  binding-protein-dependent transport systems inner membrane component  35.35 
 
 
311 aa  126  5e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  0.716912  normal  0.704951 
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  34.92 
 
 
289 aa  125  9e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  36.09 
 
 
289 aa  123  3e-27  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  30.48 
 
 
308 aa  124  3e-27  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
427 aa  122  5e-27  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  32.33 
 
 
318 aa  122  6e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  29.09 
 
 
280 aa  122  9.999999999999999e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  31.34 
 
 
313 aa  119  4.9999999999999996e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
435 aa  119  7e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  29.77 
 
 
322 aa  119  7e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  27.05 
 
 
318 aa  119  7e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_013526  Tter_2527  binding-protein-dependent transport systems inner membrane component  30.18 
 
 
309 aa  118  9.999999999999999e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.849073  n/a   
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
318 aa  118  9.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  29.27 
 
 
313 aa  117  3e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
300 aa  116  3.9999999999999997e-25  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  29.66 
 
 
298 aa  115  6e-25  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_014212  Mesil_3057  binding-protein-dependent transport systems inner membrane component  28.28 
 
 
290 aa  115  6e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
312 aa  115  6.9999999999999995e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_007908  Rfer_0953  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
292 aa  115  1.0000000000000001e-24  Rhodoferax ferrireducens T118  Bacteria  normal  0.568052  n/a   
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
299 aa  113  3e-24  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  29.32 
 
 
312 aa  113  3e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
295 aa  112  5e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  31.65 
 
 
288 aa  112  6e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
309 aa  110  2.0000000000000002e-23  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  30.08 
 
 
294 aa  111  2.0000000000000002e-23  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4941  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
309 aa  110  3e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
286 aa  110  3e-23  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
304 aa  110  3e-23  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  27.93 
 
 
296 aa  110  4.0000000000000004e-23  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  30.83 
 
 
306 aa  109  5e-23  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_012853  Rleg_5697  binding-protein-dependent transport systems inner membrane component  31.28 
 
 
305 aa  109  5e-23  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.121734 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  27.18 
 
 
312 aa  109  6e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_012791  Vapar_3349  binding-protein-dependent transport systems inner membrane component  31.46 
 
 
291 aa  109  7.000000000000001e-23  Variovorax paradoxus S110  Bacteria  normal  0.230089  n/a   
 
 
-
 
NC_008148  Rxyl_0068  binding-protein-dependent transport systems inner membrane component  27.16 
 
 
306 aa  108  8.000000000000001e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5702  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
300 aa  108  8.000000000000001e-23  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  30.59 
 
 
286 aa  108  9.000000000000001e-23  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  30.93 
 
 
287 aa  108  1e-22  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  30.59 
 
 
280 aa  108  1e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_009708  YpsIP31758_3574  carbohydrate ABC transporter permease  26.04 
 
 
294 aa  107  2e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3708  binding-protein-dependent transport systems inner membrane component  26.04 
 
 
294 aa  107  2e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  30.59 
 
 
286 aa  107  2e-22  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_012880  Dd703_0699  binding-protein-dependent transport systems inner membrane component  26.79 
 
 
291 aa  107  2e-22  Dickeya dadantii Ech703  Bacteria  normal  0.216687  n/a   
 
 
-
 
NC_010159  YpAngola_A4017  carbohydrate ABC transporter permease  26.04 
 
 
294 aa  107  3e-22  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
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