More than 300 homologs were found in PanDaTox collection
for query gene Vapar_5702 on replicon NC_012792
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012792  Vapar_5702  binding-protein-dependent transport systems inner membrane component  100 
 
 
300 aa  594  1e-169  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  35.52 
 
 
312 aa  160  3e-38  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
313 aa  156  5.0000000000000005e-37  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  35.77 
 
 
294 aa  154  2e-36  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  35.77 
 
 
309 aa  154  2e-36  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  33.96 
 
 
312 aa  150  2e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
312 aa  149  6e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
313 aa  149  7e-35  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  36.91 
 
 
300 aa  146  4.0000000000000006e-34  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
294 aa  144  2e-33  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  36.25 
 
 
289 aa  142  5e-33  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
314 aa  142  8e-33  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
289 aa  140  1.9999999999999998e-32  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
289 aa  140  1.9999999999999998e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  35.83 
 
 
289 aa  140  1.9999999999999998e-32  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
308 aa  140  1.9999999999999998e-32  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
318 aa  139  4.999999999999999e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  35.29 
 
 
289 aa  139  6e-32  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  35.42 
 
 
289 aa  138  1e-31  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2012  binding-protein-dependent transport systems inner membrane component  33.88 
 
 
310 aa  138  1e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.395958 
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  33.96 
 
 
286 aa  138  1e-31  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_010515  Bcenmc03_4380  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
319 aa  137  2e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
318 aa  137  2e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  33.96 
 
 
286 aa  136  3.0000000000000003e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  33.96 
 
 
280 aa  136  3.0000000000000003e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_008061  Bcen_5061  binding-protein-dependent transport systems inner membrane component  34.65 
 
 
319 aa  135  6.0000000000000005e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.555984  n/a   
 
 
-
 
NC_008543  Bcen2424_5799  binding-protein-dependent transport systems inner membrane component  34.65 
 
 
319 aa  135  6.0000000000000005e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.534863  normal 
 
 
-
 
NC_013526  Tter_2052  binding-protein-dependent transport systems inner membrane component  30.32 
 
 
291 aa  134  9.999999999999999e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0286  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
291 aa  135  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.231338  normal 
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
322 aa  135  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
307 aa  134  1.9999999999999998e-30  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  33.47 
 
 
307 aa  134  1.9999999999999998e-30  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_011369  Rleg2_0257  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
291 aa  133  3.9999999999999996e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.958787  normal 
 
 
-
 
NC_007650  BTH_II1178  sugar ABC transporter, permease protein, putative  33.77 
 
 
292 aa  133  5e-30  Burkholderia thailandensis E264  Bacteria  normal  0.0204998  n/a   
 
 
-
 
NC_013595  Sros_8235  ABC transporter, permease protein  38.03 
 
 
306 aa  132  6e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_4401  binding-protein-dependent transport systems inner membrane component  30.22 
 
 
316 aa  132  6.999999999999999e-30  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  32.48 
 
 
318 aa  132  9e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_009675  Anae109_1696  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
291 aa  131  1.0000000000000001e-29  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00180742  normal 
 
 
-
 
NC_010627  Bphy_7450  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
316 aa  130  2.0000000000000002e-29  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  32.1 
 
 
307 aa  131  2.0000000000000002e-29  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  29.8 
 
 
427 aa  130  3e-29  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  32.24 
 
 
435 aa  130  3e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012850  Rleg_2284  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
291 aa  129  5.0000000000000004e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.257134 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
309 aa  129  5.0000000000000004e-29  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_008786  Veis_0803  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
299 aa  129  6e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.270687  normal 
 
 
-
 
NC_011886  Achl_3074  binding-protein-dependent transport systems inner membrane component  31 
 
 
314 aa  128  1.0000000000000001e-28  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_7824  putative ABC transporter permease protein  32.34 
 
 
295 aa  127  2.0000000000000002e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0953  binding-protein-dependent transport systems inner membrane component  31.02 
 
 
292 aa  127  3e-28  Rhodoferax ferrireducens T118  Bacteria  normal  0.568052  n/a   
 
 
-
 
NC_010625  Bphy_6664  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
292 aa  125  6e-28  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4077  binding-protein-dependent transport systems inner membrane component  34.45 
 
 
317 aa  125  7e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.140823  normal  0.731226 
 
 
-
 
NC_007511  Bcep18194_B3066  ABC sugar transporter, inner membrane subunit  34.69 
 
 
322 aa  125  1e-27  Burkholderia sp. 383  Bacteria  normal  0.44514  normal 
 
 
-
 
NC_008010  Dgeo_2820  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
305 aa  125  1e-27  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1074  putative sugar ABC transporter, permease protein  34.65 
 
 
292 aa  124  2e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0231  sugar ABC transporter, permease protein  34.65 
 
 
292 aa  124  2e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3682  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
283 aa  124  2e-27  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
287 aa  124  2e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008784  BMASAVP1_0066  putative sugar ABC transporter, permease protein  34.65 
 
 
292 aa  124  2e-27  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0353  putative sugar ABC transporter, permease protein  34.65 
 
 
292 aa  124  2e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  0.422375  n/a   
 
 
-
 
NC_009075  BURPS668_A1740  binding-protein-dependent transport systems inner membrane component  34.65 
 
 
292 aa  124  2e-27  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1651  putative sugar ABC transporter, permease protein  34.65 
 
 
292 aa  124  2e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  0.278367  n/a   
 
 
-
 
NC_009079  BMA10247_A1233  putative sugar ABC transporter, permease protein  34.65 
 
 
292 aa  124  2e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  0.242804  n/a   
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  30.45 
 
 
298 aa  123  4e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_009636  Smed_0187  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
307 aa  122  6e-27  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  28.91 
 
 
286 aa  122  8e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_013411  GYMC61_2715  binding-protein-dependent transport systems inner membrane component  33.47 
 
 
289 aa  122  9.999999999999999e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  32.65 
 
 
292 aa  121  9.999999999999999e-27  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_011661  Dtur_1742  binding-protein-dependent transport systems inner membrane component  30.11 
 
 
292 aa  121  9.999999999999999e-27  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  30.31 
 
 
296 aa  121  9.999999999999999e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_014212  Mesil_3057  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
290 aa  121  1.9999999999999998e-26  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009939  Dgeo_3105  ABC transporter, permease component  32.81 
 
 
294 aa  121  1.9999999999999998e-26  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  30.97 
 
 
324 aa  120  1.9999999999999998e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3215  binding-protein-dependent transport systems inner membrane component  32.94 
 
 
291 aa  120  1.9999999999999998e-26  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_22990  binding-protein-dependent transport systems inner membrane component  29.64 
 
 
286 aa  120  3e-26  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000108841  n/a   
 
 
-
 
NC_007802  Jann_4089  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
293 aa  120  3e-26  Jannaschia sp. CCS1  Bacteria  normal  normal  0.22308 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  29.59 
 
 
280 aa  120  3e-26  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0571  binding-protein-dependent transport systems inner membrane component  33.92 
 
 
296 aa  120  3e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1681  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
316 aa  120  3e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.130846  normal 
 
 
-
 
NC_012791  Vapar_3349  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
291 aa  120  3e-26  Variovorax paradoxus S110  Bacteria  normal  0.230089  n/a   
 
 
-
 
NC_010524  Lcho_3328  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
304 aa  120  3.9999999999999996e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012850  Rleg_1307  binding-protein-dependent transport systems inner membrane component  33.78 
 
 
297 aa  120  3.9999999999999996e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3143  sugar ABC transporter  31.16 
 
 
290 aa  120  3.9999999999999996e-26  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.382012  normal 
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  26.95 
 
 
315 aa  119  4.9999999999999996e-26  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5745  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
293 aa  119  6e-26  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.555685 
 
 
-
 
NC_011899  Hore_20510  binding-protein-dependent transport systems inner membrane component  31.97 
 
 
290 aa  119  6e-26  Halothermothrix orenii H 168  Bacteria  normal  0.0790749  n/a   
 
 
-
 
NC_008541  Arth_0049  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
295 aa  119  7e-26  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2291  binding-protein-dependent transport systems inner membrane component  35.45 
 
 
311 aa  119  7.999999999999999e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.276592  normal 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
311 aa  119  7.999999999999999e-26  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_010001  Cphy_0290  binding-protein-dependent transport systems inner membrane component  31.28 
 
 
297 aa  118  9e-26  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4548  binding-protein-dependent transport systems inner membrane component  34.48 
 
 
297 aa  119  9e-26  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3241  binding-protein-dependent transport systems inner membrane component  33.75 
 
 
290 aa  118  9.999999999999999e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3554  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
311 aa  118  9.999999999999999e-26  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_4708  binding-protein-dependent transport systems inner membrane component  30.31 
 
 
293 aa  118  9.999999999999999e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3303  binding-protein-dependent transport systems inner membrane component  30.38 
 
 
299 aa  117  1.9999999999999998e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  hitchhiker  0.0062931 
 
 
-
 
NC_010483  TRQ2_0513  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
285 aa  117  1.9999999999999998e-25  Thermotoga sp. RQ2  Bacteria  normal  0.195932  n/a   
 
 
-
 
NC_007948  Bpro_0700  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
336 aa  117  1.9999999999999998e-25  Polaromonas sp. JS666  Bacteria  normal  0.788363  normal 
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  32.78 
 
 
330 aa  117  1.9999999999999998e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  32.88 
 
 
292 aa  117  3e-25  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
313 aa  117  3e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
310 aa  117  3e-25  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2525  binding-protein-dependent transport systems inner membrane component  32.28 
 
 
330 aa  117  3e-25  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
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