More than 300 homologs were found in PanDaTox collection
for query gene TM1040_3215 on replicon NC_008043
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008043  TM1040_3215  binding-protein-dependent transport systems inner membrane component  100 
 
 
291 aa  578  1e-164  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5305  binding-protein-dependent transport systems inner membrane component  61.51 
 
 
298 aa  346  2e-94  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.688973 
 
 
-
 
NC_008751  Dvul_0223  binding-protein-dependent transport systems inner membrane component  58.33 
 
 
293 aa  346  3e-94  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3305  binding-protein-dependent transport systems inner membrane component  63.73 
 
 
300 aa  342  4e-93  Acidovorax sp. JS42  Bacteria  normal  0.980927  normal 
 
 
-
 
NC_011992  Dtpsy_2658  binding-protein-dependent transport systems inner membrane component  63.73 
 
 
300 aa  341  9e-93  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00312349  n/a   
 
 
-
 
NC_011769  DvMF_0657  binding-protein-dependent transport systems inner membrane component  60.45 
 
 
297 aa  334  1e-90  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.235569 
 
 
-
 
NC_012669  Bcav_2847  binding-protein-dependent transport systems inner membrane component  52.6 
 
 
305 aa  293  3e-78  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.661532 
 
 
-
 
NC_012880  Dd703_3266  binding-protein-dependent transport systems inner membrane component  38.97 
 
 
290 aa  190  2.9999999999999997e-47  Dickeya dadantii Ech703  Bacteria  normal  0.221371  n/a   
 
 
-
 
NC_011894  Mnod_6753  binding-protein-dependent transport systems inner membrane component  42.29 
 
 
310 aa  187  2e-46  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.114113  n/a   
 
 
-
 
NC_013421  Pecwa_0841  binding-protein-dependent transport systems inner membrane component  36.9 
 
 
290 aa  185  9e-46  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_4634  binding-protein-dependent transport systems inner membrane component  36.75 
 
 
292 aa  184  1.0000000000000001e-45  Nocardioides sp. JS614  Bacteria  normal  0.219562  n/a   
 
 
-
 
NC_012917  PC1_0627  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
290 aa  182  4.0000000000000006e-45  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
306 aa  180  2.9999999999999997e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_010511  M446_6662  binding-protein-dependent transport systems inner membrane component  39.41 
 
 
288 aa  177  2e-43  Methylobacterium sp. 4-46  Bacteria  normal  0.256172  normal  0.0292677 
 
 
-
 
NC_004311  BRA1182  sugar ABC transporter, permease protein, putative  35.82 
 
 
319 aa  176  3e-43  Brucella suis 1330  Bacteria  normal  0.547049  n/a   
 
 
-
 
NC_009504  BOV_A1085  putative sugar ABC transporter, permease protein  35.82 
 
 
319 aa  176  3e-43  Brucella ovis ATCC 25840  Bacteria  normal  0.589946  n/a   
 
 
-
 
NC_009667  Oant_1668  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
310 aa  176  4e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  38.77 
 
 
316 aa  176  6e-43  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  35.19 
 
 
299 aa  175  9e-43  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1506  binding-protein-dependent transport systems inner membrane component  38.46 
 
 
319 aa  174  9.999999999999999e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.172357  normal 
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  38.82 
 
 
314 aa  174  9.999999999999999e-43  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3382  binding-protein-dependent transport systems inner membrane component  39.16 
 
 
290 aa  173  1.9999999999999998e-42  Dickeya zeae Ech1591  Bacteria  normal  0.514043  n/a   
 
 
-
 
NC_009667  Oant_2484  binding-protein-dependent transport systems inner membrane component  35.17 
 
 
318 aa  174  1.9999999999999998e-42  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.575298  n/a   
 
 
-
 
NC_007604  Synpcc7942_0526  ABC-type sugar transport systems permease components-like  36.97 
 
 
293 aa  173  3.9999999999999995e-42  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  35 
 
 
305 aa  172  5.999999999999999e-42  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  34.05 
 
 
307 aa  171  1e-41  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  34.05 
 
 
307 aa  171  1e-41  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  34.81 
 
 
317 aa  170  3e-41  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_012669  Bcav_1699  binding-protein-dependent transport systems inner membrane component  37.36 
 
 
315 aa  170  3e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.258357  normal 
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  38.84 
 
 
315 aa  169  7e-41  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_012793  GWCH70_1390  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
308 aa  168  1e-40  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  34.95 
 
 
309 aa  167  2e-40  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012850  Rleg_3429  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
307 aa  166  4e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2193  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
306 aa  166  5e-40  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.692762  normal 
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  35.27 
 
 
299 aa  166  5e-40  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_009636  Smed_2314  binding-protein-dependent transport systems inner membrane component  34.84 
 
 
310 aa  165  5.9999999999999996e-40  Sinorhizobium medicae WSM419  Bacteria  normal  0.498676  normal  0.350334 
 
 
-
 
NC_009664  Krad_0295  binding-protein-dependent transport systems inner membrane component  34.6 
 
 
306 aa  165  6.9999999999999995e-40  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0472746 
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  36.76 
 
 
311 aa  165  8e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_011772  BCG9842_B4735  putative glycerol-3-phosphate ABC transporter, permease protein  33.56 
 
 
310 aa  165  1.0000000000000001e-39  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  34.72 
 
 
309 aa  165  1.0000000000000001e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0630  glycerol-3-phosphate ABC transporter, permease protein, putative  32.53 
 
 
310 aa  164  2.0000000000000002e-39  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2919  binding-protein-dependent transport systems inner membrane component  37.96 
 
 
310 aa  164  2.0000000000000002e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29020  carbohydrate ABC transporter membrane protein  36.76 
 
 
275 aa  164  2.0000000000000002e-39  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0698  putative glycerol-3-phosphate ABC transporter, permease protein  32.53 
 
 
310 aa  164  2.0000000000000002e-39  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0481  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
310 aa  164  2.0000000000000002e-39  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0604  putative glycerol-3-phosphate ABC transporter, permease protein  33.22 
 
 
310 aa  164  2.0000000000000002e-39  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0639  binding-protein-dependent transport systems inner membrane component  37.3 
 
 
305 aa  164  2.0000000000000002e-39  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.371496  n/a   
 
 
-
 
NC_011773  BCAH820_0623  putative glycerol-3-phosphate ABC transporter, permease protein  32.87 
 
 
310 aa  163  3e-39  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK0480  glycerol-3-phosphate ABC transporter, permease  32.87 
 
 
310 aa  163  3e-39  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4983  binding-protein-dependent transporter inner membrane protein  34.17 
 
 
310 aa  163  3e-39  'Nostoc azollae' 0708  Bacteria  normal  0.300856  n/a   
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
306 aa  163  3e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2587  binding-protein-dependent transport systems inner membrane component  37.86 
 
 
314 aa  162  5.0000000000000005e-39  Jannaschia sp. CCS1  Bacteria  decreased coverage  0.000137508  normal 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
313 aa  162  5.0000000000000005e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0478  glycerol-3-phosphate ABC transporter, permease  32.87 
 
 
310 aa  162  6e-39  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0536  glycerol-3-phosphate ABC transporter permease  32.53 
 
 
310 aa  161  1e-38  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0567  glycerol-3-phosphate ABC transporter permease protein  32.53 
 
 
310 aa  161  1e-38  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  32.41 
 
 
309 aa  161  1e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_012669  Bcav_0321  binding-protein-dependent transport systems inner membrane component  31.99 
 
 
316 aa  160  2e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2511  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
317 aa  160  2e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.10809  n/a   
 
 
-
 
NC_013205  Aaci_0077  binding-protein-dependent transport systems inner membrane component  32.12 
 
 
311 aa  161  2e-38  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  34.91 
 
 
299 aa  160  2e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_009972  Haur_1151  binding-protein-dependent transport systems inner membrane component  34.57 
 
 
314 aa  160  2e-38  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.59424  n/a   
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
317 aa  160  2e-38  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011369  Rleg2_1771  binding-protein-dependent transport systems inner membrane component  36.52 
 
 
307 aa  160  3e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.2153  normal  0.0141948 
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  33.92 
 
 
288 aa  160  3e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
296 aa  159  3e-38  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
295 aa  160  3e-38  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3250  binding-protein-dependent transporter inner membrane component  32.01 
 
 
310 aa  160  3e-38  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
308 aa  159  5e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_012669  Bcav_3002  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
320 aa  159  5e-38  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4638  binding-protein dependent transport system inner membrane protein  33.72 
 
 
308 aa  158  9e-38  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000000461706  normal  0.23331 
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  37.31 
 
 
287 aa  158  1e-37  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4663  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
299 aa  158  1e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.456499 
 
 
-
 
NC_014210  Ndas_1084  binding-protein-dependent transport systems inner membrane component  37.16 
 
 
315 aa  158  1e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.31256  normal  0.442716 
 
 
-
 
NC_011726  PCC8801_4236  binding-protein-dependent transport systems inner membrane component  37.08 
 
 
294 aa  158  1e-37  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
318 aa  157  1e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_009767  Rcas_2545  binding-protein-dependent transport systems inner membrane component  35 
 
 
316 aa  158  1e-37  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.637107  normal  0.115222 
 
 
-
 
NC_013161  Cyan8802_4298  binding-protein-dependent transport systems inner membrane component  37.08 
 
 
294 aa  158  1e-37  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.200183 
 
 
-
 
NC_013235  Namu_3848  binding-protein-dependent transport systems inner membrane component  31.83 
 
 
320 aa  157  2e-37  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0230008  normal  0.429544 
 
 
-
 
NC_012669  Bcav_2602  binding-protein-dependent transport systems inner membrane component  34.39 
 
 
306 aa  157  2e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0924232  normal 
 
 
-
 
NC_009523  RoseRS_1357  binding-protein-dependent transport systems inner membrane component  36.59 
 
 
316 aa  157  2e-37  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2819  binding-protein-dependent transport systems inner membrane component  35 
 
 
315 aa  157  2e-37  Roseiflexus sp. RS-1  Bacteria  normal  0.0308401  normal 
 
 
-
 
NC_013526  Tter_2041  binding-protein-dependent transport systems inner membrane component  31.69 
 
 
305 aa  157  2e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00457854  n/a   
 
 
-
 
NC_012669  Bcav_1523  binding-protein-dependent transport systems inner membrane component  37.85 
 
 
321 aa  157  2e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  35.54 
 
 
318 aa  156  3e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  34.71 
 
 
320 aa  156  3e-37  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  34.6 
 
 
319 aa  156  5.0000000000000005e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0115  binding-protein-dependent transport systems inner membrane component  37.04 
 
 
303 aa  155  5.0000000000000005e-37  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.013229  normal 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
309 aa  155  6e-37  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014210  Ndas_0753  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
312 aa  155  7e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.308461  normal 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  36.76 
 
 
307 aa  155  7e-37  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_011899  Hore_15550  binding-protein-dependent transport systems inner membrane component  39.08 
 
 
294 aa  155  8e-37  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_29330  permease component of ABC-type sugar transporter  34.47 
 
 
321 aa  155  8e-37  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03080  permease component of ABC-type sugar transporter  36.36 
 
 
322 aa  155  8e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.151535  normal 
 
 
-
 
NC_013721  HMPREF0424_1290  ABC transporter, permease protein  34.04 
 
 
311 aa  154  1e-36  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_008025  Dgeo_1168  binding-protein-dependent transport systems inner membrane component  36.65 
 
 
310 aa  154  1e-36  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.155614  normal 
 
 
-
 
NC_009523  RoseRS_4568  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
352 aa  154  1e-36  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0944  binding-protein-dependent transport systems inner membrane component  35.25 
 
 
290 aa  154  2e-36  Cyanothece sp. PCC 7425  Bacteria  normal  0.120711  normal  0.307929 
 
 
-
 
NC_013172  Bfae_29440  permease component of ABC-type sugar transporter  35.04 
 
 
318 aa  154  2e-36  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0905  transmembrane permease MsmF  30.34 
 
 
289 aa  153  2.9999999999999998e-36  Clostridium perfringens SM101  Bacteria  normal  0.0122469  n/a   
 
 
-
 
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