| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0115 |
|---|
| Symbol | |
|---|
| ID | 5537575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 138018 |
|---|
| End bp | 138929 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640892280 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001430269 |
|---|
| Protein GI | 156740140 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.013229 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTGT TCTCTGTGCC GCGCCTGCGC GCCAATGCGC GCGAGTGGCG TGAAAGCGTA
TTGTTTCTCC TGTTGGTAGG ACCGAACCTG CTGCTGCTCG CAGCATTTAC GTTCTGGCCC
ATGATCTACA ACGCCTACCT GAGCACGATC AGTTGGAACT TTCTCAGCCC GATCCGCCGT
TTCGTCGGTC TGCGCAACTA CGAGACCGTC CTGAGCAGCG AGATTTTTCG TGTCGTGTTA
ATCAATACCG CAGTGTTTAC GGTTGTGTCG GTGGCTGCCA CGATGGCGCT CGGTCTGGGG
CTGGCATTGC TGTTGAACCA ACCGCTGCGC TGGCGCGAAG GCACGCGGGC AGTGCTCTTC
ACGCCAACCG TTCTTTCGGG TGCGGCGATT GCGATTGTCT GGATCTACAT CTTCGATCCG
CGTTTCGGGC TGCTGGCGCA GATCCTCGGC TGGTTCGGCA TTCTTTCGCC GAACTGGCTT
GCCGATCCAA ACTGGGCGAT GACGGCGCTC CTGATCGTCT ATATCTGGAA AAATACCGGC
TATGCCGTTG TCATCTATCT GGCAGGATTG CAGACAATTG ACCGGACGCT CTACGAAGCA
GCCCGGATCG ACGGCGCCGG ACCGTGGGGG CAATTCTGGC ATGTGACGCT TCCCGGTCTG
TCGCCGATCA TCTTTTTCCT GCTGGTGACG AGTATTCTGG CATGCTTCCA GGCGTTCGAC
ATTATTCGGG TGATGACCGA CGGCGGACCG GTGAACGCCA CCAATATGCT GGTGTACCAC
TTGTACGAAC GCGGTTTCAT CCAGTCGCAG GCTGGACCGG CAGGCGTCGT GGCAATGGTG
ATGTTTGTCC TGATGTTGAT CCTGACCCTC CTGCAATTGC GATTTCTAGA GCGACGGGTG
CATTACAGTT GA
|
|---|
| Protein sequence | MSVFSVPRLR ANAREWRESV LFLLLVGPNL LLLAAFTFWP MIYNAYLSTI SWNFLSPIRR
FVGLRNYETV LSSEIFRVVL INTAVFTVVS VAATMALGLG LALLLNQPLR WREGTRAVLF
TPTVLSGAAI AIVWIYIFDP RFGLLAQILG WFGILSPNWL ADPNWAMTAL LIVYIWKNTG
YAVVIYLAGL QTIDRTLYEA ARIDGAGPWG QFWHVTLPGL SPIIFFLLVT SILACFQAFD
IIRVMTDGGP VNATNMLVYH LYERGFIQSQ AGPAGVVAMV MFVLMLILTL LQLRFLERRV
HYS
|
|---|
| |