More than 300 homologs were found in PanDaTox collection
for query gene PC1_0627 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_0627  binding-protein-dependent transport systems inner membrane component  100 
 
 
290 aa  576  1.0000000000000001e-163  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0841  binding-protein-dependent transport systems inner membrane component  97.59 
 
 
290 aa  548  1e-155  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3266  binding-protein-dependent transport systems inner membrane component  74.48 
 
 
290 aa  436  1e-121  Dickeya dadantii Ech703  Bacteria  normal  0.221371  n/a   
 
 
-
 
NC_012912  Dd1591_3382  binding-protein-dependent transport systems inner membrane component  75.95 
 
 
290 aa  403  1e-111  Dickeya zeae Ech1591  Bacteria  normal  0.514043  n/a   
 
 
-
 
NC_011894  Mnod_6753  binding-protein-dependent transport systems inner membrane component  48.57 
 
 
310 aa  229  3e-59  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.114113  n/a   
 
 
-
 
NC_010511  M446_6662  binding-protein-dependent transport systems inner membrane component  47.21 
 
 
288 aa  216  2.9999999999999998e-55  Methylobacterium sp. 4-46  Bacteria  normal  0.256172  normal  0.0292677 
 
 
-
 
NC_012669  Bcav_2847  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
305 aa  196  3e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.661532 
 
 
-
 
NC_011992  Dtpsy_2658  binding-protein-dependent transport systems inner membrane component  39.11 
 
 
300 aa  196  4.0000000000000005e-49  Acidovorax ebreus TPSY  Bacteria  decreased coverage  0.00312349  n/a   
 
 
-
 
NC_008782  Ajs_3305  binding-protein-dependent transport systems inner membrane component  39.85 
 
 
300 aa  195  6e-49  Acidovorax sp. JS42  Bacteria  normal  0.980927  normal 
 
 
-
 
NC_008751  Dvul_0223  binding-protein-dependent transport systems inner membrane component  39.22 
 
 
293 aa  190  2e-47  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008043  TM1040_3215  binding-protein-dependent transport systems inner membrane component  37.59 
 
 
291 aa  189  4e-47  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5305  binding-protein-dependent transport systems inner membrane component  39.85 
 
 
298 aa  189  5.999999999999999e-47  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.688973 
 
 
-
 
NC_011769  DvMF_0657  binding-protein-dependent transport systems inner membrane component  37.78 
 
 
297 aa  176  4e-43  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.235569 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  35.23 
 
 
317 aa  170  3e-41  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_011899  Hore_20620  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
299 aa  165  1.0000000000000001e-39  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0481  binding-protein-dependent transport systems inner membrane component  33.81 
 
 
310 aa  161  1e-38  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0604  putative glycerol-3-phosphate ABC transporter, permease protein  33.81 
 
 
310 aa  161  1e-38  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0480  glycerol-3-phosphate ABC transporter, permease  33.81 
 
 
310 aa  160  2e-38  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4735  putative glycerol-3-phosphate ABC transporter, permease protein  33.81 
 
 
310 aa  160  2e-38  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_0623  putative glycerol-3-phosphate ABC transporter, permease protein  33.81 
 
 
310 aa  160  2e-38  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_003909  BCE_0630  glycerol-3-phosphate ABC transporter, permease protein, putative  33.81 
 
 
310 aa  160  3e-38  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0698  putative glycerol-3-phosphate ABC transporter, permease protein  33.81 
 
 
310 aa  160  3e-38  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0536  glycerol-3-phosphate ABC transporter permease  33.45 
 
 
310 aa  159  6e-38  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0567  glycerol-3-phosphate ABC transporter permease protein  33.45 
 
 
310 aa  159  6e-38  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  36.11 
 
 
316 aa  158  8e-38  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_0478  glycerol-3-phosphate ABC transporter, permease  33.45 
 
 
310 aa  158  1e-37  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2314  binding-protein-dependent transport systems inner membrane component  37.06 
 
 
310 aa  154  1e-36  Sinorhizobium medicae WSM419  Bacteria  normal  0.498676  normal  0.350334 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
307 aa  153  2.9999999999999998e-36  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  35.64 
 
 
307 aa  153  2.9999999999999998e-36  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_011884  Cyan7425_3980  binding-protein-dependent transport systems inner membrane component  36.2 
 
 
299 aa  152  4e-36  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.00655631 
 
 
-
 
NC_012793  GWCH70_1390  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
308 aa  152  7e-36  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
306 aa  151  1e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_011661  Dtur_0382  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
296 aa  150  2e-35  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0077  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
311 aa  150  2e-35  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0377  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
294 aa  147  1.0000000000000001e-34  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4983  binding-protein-dependent transporter inner membrane protein  30.3 
 
 
310 aa  146  3e-34  'Nostoc azollae' 0708  Bacteria  normal  0.300856  n/a   
 
 
-
 
NC_013131  Caci_4319  binding-protein-dependent transport systems inner membrane component  35.14 
 
 
312 aa  145  8.000000000000001e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.778687  hitchhiker  0.00185272 
 
 
-
 
NC_013526  Tter_2316  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
313 aa  144  1e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0691  binding-protein-dependent transport systems inner membrane component  31.21 
 
 
295 aa  145  1e-33  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
319 aa  144  2e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011881  Achl_4622  binding-protein-dependent transport systems inner membrane component  31.18 
 
 
317 aa  143  3e-33  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009667  Oant_1668  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
310 aa  143  3e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA1182  sugar ABC transporter, permease protein, putative  35.02 
 
 
319 aa  142  6e-33  Brucella suis 1330  Bacteria  normal  0.547049  n/a   
 
 
-
 
NC_009504  BOV_A1085  putative sugar ABC transporter, permease protein  35.02 
 
 
319 aa  142  6e-33  Brucella ovis ATCC 25840  Bacteria  normal  0.589946  n/a   
 
 
-
 
NC_012880  Dd703_0068  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
315 aa  141  9.999999999999999e-33  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  34.97 
 
 
299 aa  141  9.999999999999999e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_010483  TRQ2_0115  binding-protein-dependent transport systems inner membrane component  33.81 
 
 
300 aa  140  1.9999999999999998e-32  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0477  ABC tranporter, permease protein  32.08 
 
 
315 aa  140  1.9999999999999998e-32  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0117  binding-protein-dependent transport systems inner membrane component  33.81 
 
 
300 aa  140  1.9999999999999998e-32  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_1290  ABC transporter, permease protein  33.08 
 
 
311 aa  139  3.9999999999999997e-32  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_3792  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
285 aa  139  3.9999999999999997e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.168129  normal 
 
 
-
 
NC_010159  YpAngola_A4017  carbohydrate ABC transporter permease  31.6 
 
 
294 aa  139  3.9999999999999997e-32  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_29020  carbohydrate ABC transporter membrane protein  36.02 
 
 
275 aa  139  4.999999999999999e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3708  binding-protein-dependent transport systems inner membrane component  32.85 
 
 
294 aa  139  7e-32  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3574  carbohydrate ABC transporter permease  32.85 
 
 
294 aa  139  7e-32  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0288  binding-protein-dependent transport systems inner membrane component  30.93 
 
 
290 aa  138  8.999999999999999e-32  Petrotoga mobilis SJ95  Bacteria  hitchhiker  0.00066862  n/a   
 
 
-
 
NC_009972  Haur_1151  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
314 aa  138  8.999999999999999e-32  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.59424  n/a   
 
 
-
 
NC_007413  Ava_4638  binding-protein dependent transport system inner membrane protein  32.32 
 
 
308 aa  138  1e-31  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.000000461706  normal  0.23331 
 
 
-
 
NC_010483  TRQ2_1695  binding-protein-dependent transport systems inner membrane component  32.4 
 
 
288 aa  138  1e-31  Thermotoga sp. RQ2  Bacteria  normal  0.967188  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  30.8 
 
 
309 aa  138  1e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0905  transmembrane permease MsmF  33.33 
 
 
289 aa  138  1e-31  Clostridium perfringens SM101  Bacteria  normal  0.0122469  n/a   
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  29.51 
 
 
312 aa  137  1e-31  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_007413  Ava_0461  binding-protein dependent transport system inner membrane protein  34.16 
 
 
301 aa  137  2e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0667876 
 
 
-
 
NC_010524  Lcho_3242  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
317 aa  137  2e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011886  Achl_3567  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
309 aa  137  2e-31  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_011366  Rleg2_5714  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
310 aa  137  2e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.568061 
 
 
-
 
NC_012669  Bcav_1469  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
283 aa  137  2e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2847  binding-protein-dependent transport systems inner membrane component  32.74 
 
 
318 aa  137  3.0000000000000003e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010483  TRQ2_0339  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
420 aa  137  3.0000000000000003e-31  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  34.29 
 
 
288 aa  135  6.0000000000000005e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_011368  Rleg2_4663  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
299 aa  135  7.000000000000001e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.456499 
 
 
-
 
NC_011368  Rleg2_5336  binding-protein-dependent transport systems inner membrane component  36.21 
 
 
318 aa  135  7.000000000000001e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.949955  normal 
 
 
-
 
NC_012848  Rleg_5336  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
310 aa  135  7.000000000000001e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.369054 
 
 
-
 
NC_008261  CPF_0557  ABC transporter, permease protein  33.11 
 
 
308 aa  135  8e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7347  ABC transporter membrane spanning protein (sugar)  34.66 
 
 
320 aa  135  8e-31  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5053  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
318 aa  135  9e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0625824  normal 
 
 
-
 
NC_010001  Cphy_0290  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
297 aa  135  9e-31  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3307  sugar transport system (permease)  30.63 
 
 
325 aa  134  9.999999999999999e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.175437 
 
 
-
 
NC_013526  Tter_2523  binding-protein-dependent transport systems inner membrane component  31.49 
 
 
309 aa  134  1.9999999999999998e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000325465  n/a   
 
 
-
 
NC_013205  Aaci_2047  binding-protein-dependent transport systems inner membrane component  30.69 
 
 
294 aa  134  1.9999999999999998e-30  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.550241  n/a   
 
 
-
 
NC_008262  CPR_0541  ABC transporter, permease protein  33.33 
 
 
308 aa  134  1.9999999999999998e-30  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3990  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
317 aa  134  1.9999999999999998e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3651  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
301 aa  134  1.9999999999999998e-30  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0332234  normal 
 
 
-
 
NC_009616  Tmel_0752  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
288 aa  134  1.9999999999999998e-30  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_4298  binding-protein-dependent transport systems inner membrane component  34.48 
 
 
294 aa  133  3e-30  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.200183 
 
 
-
 
NC_010003  Pmob_0955  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
291 aa  133  3e-30  Petrotoga mobilis SJ95  Bacteria  normal  0.0196347  n/a   
 
 
-
 
NC_011726  PCC8801_4236  binding-protein-dependent transport systems inner membrane component  34.48 
 
 
294 aa  133  3e-30  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013205  Aaci_1216  binding-protein-dependent transport systems inner membrane component  29.23 
 
 
315 aa  133  3e-30  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  decreased coverage  0.00000228392  n/a   
 
 
-
 
NC_013526  Tter_2573  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
309 aa  134  3e-30  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  34.09 
 
 
303 aa  133  3.9999999999999996e-30  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_011981  Avi_7592  ABC transporter  33.21 
 
 
306 aa  132  5e-30  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0295  ABC-type sugar transport system periplasmic component-like protein  30.58 
 
 
300 aa  132  5e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_1051  lactose transport system permease protein  34.56 
 
 
306 aa  132  6e-30  Synechococcus sp. CC9902  Bacteria  normal  0.390377  n/a   
 
 
-
 
NC_009486  Tpet_0321  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
420 aa  132  6.999999999999999e-30  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2817  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
310 aa  132  7.999999999999999e-30  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.822068  normal 
 
 
-
 
NC_013526  Tter_2292  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
306 aa  131  1.0000000000000001e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1290  binding-protein-dependent transport systems inner membrane component  36.72 
 
 
297 aa  131  1.0000000000000001e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_0563  binding-protein dependent transport system inner membrane protein  34.25 
 
 
294 aa  131  1.0000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  0.22835  normal  0.0558608 
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  32.38 
 
 
315 aa  131  1.0000000000000001e-29  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_012669  Bcav_1699  binding-protein-dependent transport systems inner membrane component  34.59 
 
 
315 aa  131  1.0000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.258357  normal 
 
 
-
 
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