More than 300 homologs were found in PanDaTox collection
for query gene BBta_2540 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_2540  ABC transporter permease  100 
 
 
306 aa  589  1e-167  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0884  binding-protein-dependent transport systems inner membrane component  46.21 
 
 
289 aa  171  1e-41  Mycobacterium sp. MCS  Bacteria  normal  0.97739  n/a   
 
 
-
 
NC_008705  Mkms_0901  binding-protein-dependent transport systems inner membrane component  46.21 
 
 
289 aa  171  1e-41  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0890  binding-protein-dependent transport systems inner membrane component  46.21 
 
 
289 aa  171  2e-41  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0682168 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  34.78 
 
 
318 aa  159  4e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
309 aa  154  2e-36  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  36.43 
 
 
296 aa  152  5.9999999999999996e-36  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_009664  Krad_3460  binding-protein-dependent transport systems inner membrane component  44.32 
 
 
316 aa  152  7e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.419819  normal 
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
294 aa  150  3e-35  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4941  binding-protein-dependent transport systems inner membrane component  34.4 
 
 
309 aa  149  5e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  38.38 
 
 
307 aa  146  5e-34  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  38.38 
 
 
307 aa  146  5e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  35 
 
 
298 aa  144  2e-33  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_012848  Rleg_4708  binding-protein-dependent transport systems inner membrane component  32.85 
 
 
293 aa  144  2e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  33.78 
 
 
328 aa  142  8e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5745  binding-protein-dependent transport systems inner membrane component  32.01 
 
 
293 aa  141  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.555685 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  35.21 
 
 
318 aa  140  3e-32  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03710  carbohydrate ABC transporter membrane protein  38.01 
 
 
332 aa  139  4.999999999999999e-32  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.899537 
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  32.96 
 
 
314 aa  139  6e-32  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
427 aa  138  1e-31  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_010524  Lcho_3328  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
304 aa  137  2e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009939  Dgeo_2918  ABC-type sugar transport system, permease component  38.81 
 
 
305 aa  136  3.0000000000000003e-31  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
313 aa  137  3.0000000000000003e-31  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5637  binding-protein-dependent transport systems inner membrane component  33.8 
 
 
318 aa  136  4e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  36.36 
 
 
292 aa  136  4e-31  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_009664  Krad_4401  binding-protein-dependent transport systems inner membrane component  35.42 
 
 
316 aa  136  4e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
320 aa  136  4e-31  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_008541  Arth_0049  binding-protein-dependent transport systems inner membrane component  34.7 
 
 
295 aa  135  6.0000000000000005e-31  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3349  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
291 aa  135  9.999999999999999e-31  Variovorax paradoxus S110  Bacteria  normal  0.230089  n/a   
 
 
-
 
NC_012850  Rleg_2284  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
291 aa  134  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.257134 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  30.6 
 
 
307 aa  134  1.9999999999999998e-30  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_009668  Oant_2941  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
320 aa  133  3e-30  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.974377  n/a   
 
 
-
 
NC_009484  Acry_1657  binding-protein-dependent transport systems inner membrane component  34.13 
 
 
332 aa  133  3.9999999999999996e-30  Acidiphilium cryptum JF-5  Bacteria  normal  0.971027  n/a   
 
 
-
 
NC_011661  Dtur_1742  binding-protein-dependent transport systems inner membrane component  35.11 
 
 
292 aa  132  6e-30  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
324 aa  132  7.999999999999999e-30  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5492  binding-protein-dependent transport systems inner membrane component  31.83 
 
 
328 aa  131  1.0000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.511246  normal  0.17987 
 
 
-
 
NC_010627  Bphy_7450  binding-protein-dependent transport systems inner membrane component  31.06 
 
 
316 aa  131  1.0000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1529  binding-protein-dependent transport systems inner membrane component  34.81 
 
 
318 aa  131  2.0000000000000002e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.165529  normal  0.149292 
 
 
-
 
NC_004311  BRA0305  sugar ABC transporter, permease protein  31.14 
 
 
325 aa  130  3e-29  Brucella suis 1330  Bacteria  normal  0.0474821  n/a   
 
 
-
 
NC_011368  Rleg2_5350  binding-protein-dependent transport systems inner membrane component  34.28 
 
 
308 aa  129  4.0000000000000003e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.84186  normal  0.48209 
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
308 aa  129  4.0000000000000003e-29  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
294 aa  129  4.0000000000000003e-29  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3145  binding-protein-dependent transport systems inner membrane component  34.58 
 
 
303 aa  129  5.0000000000000004e-29  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.236219 
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  31.23 
 
 
322 aa  129  5.0000000000000004e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_010511  M446_1972  binding-protein-dependent transport systems inner membrane component  35.48 
 
 
319 aa  129  6e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3713  binding-protein-dependent transport systems inner membrane component  32.88 
 
 
297 aa  129  7.000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.174244 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  34.25 
 
 
300 aa  128  1.0000000000000001e-28  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_010001  Cphy_1390  binding-protein-dependent transport systems inner membrane component  31.43 
 
 
308 aa  128  1.0000000000000001e-28  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0280  sugar ABC transporter, permease protein  32.88 
 
 
325 aa  128  1.0000000000000001e-28  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3241  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
290 aa  127  2.0000000000000002e-28  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3633  binding-protein dependent transport system inner membrane protein  32.07 
 
 
288 aa  127  2.0000000000000002e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.27163 
 
 
-
 
NC_007958  RPD_3149  binding-protein-dependent transport systems inner membrane component  38.55 
 
 
315 aa  127  2.0000000000000002e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0566553  normal  0.330059 
 
 
-
 
NC_008061  Bcen_3593  binding-protein-dependent transport systems inner membrane component  34.59 
 
 
289 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4157  binding-protein-dependent transport systems inner membrane component  34.21 
 
 
289 aa  127  2.0000000000000002e-28  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_4774  binding-protein-dependent transport systems inner membrane component  34.59 
 
 
289 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.808754 
 
 
-
 
NC_010515  Bcenmc03_5509  binding-protein-dependent transport systems inner membrane component  34.59 
 
 
289 aa  127  2.0000000000000002e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.438366  normal 
 
 
-
 
NC_012669  Bcav_0146  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
292 aa  127  2.0000000000000002e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0896196  normal 
 
 
-
 
NC_002947  PP_2262  binding-protein-dependent transport systems inner membrane component  31.94 
 
 
303 aa  127  3e-28  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.000854732 
 
 
-
 
NC_011886  Achl_2900  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
295 aa  127  3e-28  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_007925  RPC_1364  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
300 aa  127  3e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.641446  normal 
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  33.61 
 
 
280 aa  127  3e-28  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  34.21 
 
 
289 aa  127  3e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
286 aa  127  3e-28  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6903  binding-protein-dependent transport systems inner membrane component  30 
 
 
324 aa  127  3e-28  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0156181  normal  0.0141251 
 
 
-
 
NC_009921  Franean1_7050  binding-protein-dependent transport systems inner membrane component  34.89 
 
 
330 aa  127  3e-28  Frankia sp. EAN1pec  Bacteria  normal  0.0817185  normal 
 
 
-
 
NC_009485  BBta_3555  putative ABC transporter permease protein  31.82 
 
 
317 aa  127  3e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.34254  normal 
 
 
-
 
NC_009512  Pput_3476  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
288 aa  126  4.0000000000000003e-28  Pseudomonas putida F1  Bacteria  normal  0.747146  normal  0.0291568 
 
 
-
 
NC_010501  PputW619_1735  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
287 aa  126  4.0000000000000003e-28  Pseudomonas putida W619  Bacteria  normal  normal  0.336852 
 
 
-
 
NC_007511  Bcep18194_B0940  ABC sugar transporter, inner membrane subunit  34.59 
 
 
289 aa  126  5e-28  Burkholderia sp. 383  Bacteria  normal  normal  0.298922 
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  33.61 
 
 
286 aa  126  5e-28  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  31.99 
 
 
295 aa  125  6e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_007925  RPC_3645  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
318 aa  126  6e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.415839 
 
 
-
 
NC_010322  PputGB1_1895  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
288 aa  126  6e-28  Pseudomonas putida GB-1  Bacteria  normal  normal  0.248949 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  35.19 
 
 
309 aa  126  6e-28  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  29.07 
 
 
320 aa  125  7e-28  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_009620  Smed_4642  binding-protein-dependent transport systems inner membrane component  31.21 
 
 
294 aa  125  8.000000000000001e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.288658  normal  0.0756683 
 
 
-
 
NC_009439  Pmen_2044  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
287 aa  125  9e-28  Pseudomonas mendocina ymp  Bacteria  normal  0.071999  normal  0.651728 
 
 
-
 
NC_009485  BBta_2224  putative ABC transporter permease protein  33.94 
 
 
300 aa  125  9e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.405929  normal  0.034026 
 
 
-
 
NC_007778  RPB_4214  binding-protein-dependent transport systems inner membrane component  32.01 
 
 
300 aa  125  1e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.586864 
 
 
-
 
NC_012848  Rleg_4750  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
299 aa  125  1e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.62916  normal  0.701692 
 
 
-
 
NC_007958  RPD_4066  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
300 aa  125  1e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.556479  normal  0.615548 
 
 
-
 
NC_012669  Bcav_0571  binding-protein-dependent transport systems inner membrane component  34.53 
 
 
296 aa  125  1e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0176  binding-protein dependent transport system inner membrane protein  37.75 
 
 
314 aa  124  2e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1414  binding-protein-dependent transport systems inner membrane component  31.44 
 
 
314 aa  124  2e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3959  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
315 aa  124  2e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4892  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
300 aa  124  2e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.963081  n/a   
 
 
-
 
NC_008786  Veis_0803  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
299 aa  124  3e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.270687  normal 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  31.46 
 
 
319 aa  123  4e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5714  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
310 aa  123  5e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.568061 
 
 
-
 
NC_010682  Rpic_3330  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
296 aa  122  6e-27  Ralstonia pickettii 12J  Bacteria  normal  normal  0.670382 
 
 
-
 
NC_012856  Rpic12D_2983  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
296 aa  122  6e-27  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5697  binding-protein-dependent transport systems inner membrane component  32.46 
 
 
305 aa  122  7e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.121734 
 
 
-
 
NC_012848  Rleg_5336  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
310 aa  122  7e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.369054 
 
 
-
 
NC_011366  Rleg2_5689  binding-protein-dependent transport systems inner membrane component  29.54 
 
 
294 aa  122  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3321  binding-protein-dependent transport systems inner membrane component  30.83 
 
 
317 aa  121  9.999999999999999e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5641  normal 
 
 
-
 
NC_007963  Csal_2611  binding-protein-dependent transport systems inner membrane component  31.93 
 
 
280 aa  121  9.999999999999999e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_6238  ABC transporter membrane spanning protein (maltose)  29.55 
 
 
294 aa  121  9.999999999999999e-27  Agrobacterium vitis S4  Bacteria  normal  0.602267  n/a   
 
 
-
 
NC_011368  Rleg2_4663  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
299 aa  122  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.456499 
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  35.52 
 
 
287 aa  121  9.999999999999999e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  33.78 
 
 
330 aa  121  9.999999999999999e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
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