More than 300 homologs were found in PanDaTox collection
for query gene Avi_6238 on replicon NC_011988
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011988  Avi_6238  ABC transporter membrane spanning protein (maltose)  100 
 
 
294 aa  591  1e-168  Agrobacterium vitis S4  Bacteria  normal  0.602267  n/a   
 
 
-
 
NC_009620  Smed_4642  binding-protein-dependent transport systems inner membrane component  81.63 
 
 
294 aa  493  9.999999999999999e-139  Sinorhizobium medicae WSM419  Bacteria  normal  0.288658  normal  0.0756683 
 
 
-
 
NC_011366  Rleg2_5689  binding-protein-dependent transport systems inner membrane component  81.85 
 
 
294 aa  493  9.999999999999999e-139  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6633  binding-protein-dependent transport systems inner membrane component  80.14 
 
 
294 aa  484  1e-136  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.61386 
 
 
-
 
NC_011899  Hore_00790  binding-protein-dependent transport systems inner membrane component  41.46 
 
 
262 aa  194  2e-48  Halothermothrix orenii H 168  Bacteria  normal  0.772214  n/a   
 
 
-
 
NC_010003  Pmob_0474  binding-protein-dependent transport systems inner membrane component  34.6 
 
 
291 aa  179  4.999999999999999e-44  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
312 aa  172  3.9999999999999995e-42  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
324 aa  171  2e-41  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  37.21 
 
 
307 aa  168  9e-41  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_008699  Noca_1419  binding-protein-dependent transport systems inner membrane component  30.93 
 
 
314 aa  167  2e-40  Nocardioides sp. JS614  Bacteria  normal  0.906597  n/a   
 
 
-
 
NC_012848  Rleg_5336  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
310 aa  167  2.9999999999999998e-40  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.369054 
 
 
-
 
NC_011366  Rleg2_5714  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
310 aa  166  4e-40  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.568061 
 
 
-
 
NC_010623  Bphy_4058  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
309 aa  165  8e-40  Burkholderia phymatum STM815  Bacteria  normal  normal  0.801646 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  32.66 
 
 
427 aa  165  9e-40  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_009620  Smed_4329  binding-protein-dependent transport systems inner membrane component  34.4 
 
 
309 aa  163  3e-39  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0434884 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  33.83 
 
 
296 aa  161  1e-38  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  34.21 
 
 
309 aa  161  1e-38  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_004311  BRA0749  sugar ABC transporter, permease protein, putative  32.14 
 
 
289 aa  160  3e-38  Brucella suis 1330  Bacteria  normal  0.444567  n/a   
 
 
-
 
NC_014165  Tbis_1885  binding-protein-dependent transporter inner membrane component  35.12 
 
 
317 aa  160  3e-38  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.44963 
 
 
-
 
NC_007778  RPB_2098  binding-protein-dependent transport systems inner membrane component  35.84 
 
 
317 aa  159  4e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.529199  hitchhiker  0.000478367 
 
 
-
 
NC_011894  Mnod_1414  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
314 aa  159  4e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3645  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
318 aa  159  6e-38  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.415839 
 
 
-
 
NC_011004  Rpal_3959  binding-protein-dependent transport systems inner membrane component  34.84 
 
 
315 aa  159  6e-38  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2891  binding-protein-dependent transport systems inner membrane component  34.15 
 
 
318 aa  158  8e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.400754  normal  0.350094 
 
 
-
 
NC_009953  Sare_0748  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
337 aa  158  1e-37  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00168888 
 
 
-
 
NC_009720  Xaut_0501  binding-protein-dependent transport systems inner membrane component  36.3 
 
 
365 aa  158  1e-37  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0699  putative sugar ABC transporter, permease protein  31.79 
 
 
289 aa  158  1e-37  Brucella ovis ATCC 25840  Bacteria  normal  0.383075  n/a   
 
 
-
 
NC_010676  Bphyt_7207  binding-protein-dependent transport systems inner membrane component  32.04 
 
 
296 aa  157  2e-37  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3321  binding-protein-dependent transport systems inner membrane component  34.77 
 
 
317 aa  157  2e-37  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5641  normal 
 
 
-
 
NC_009718  Fnod_0449  binding-protein-dependent transport systems inner membrane component  33.56 
 
 
295 aa  157  2e-37  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.982578  n/a   
 
 
-
 
NC_007952  Bxe_B0419  ABC sugar transporter, inner membrane subunit  31.69 
 
 
296 aa  157  3e-37  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  35.59 
 
 
304 aa  157  3e-37  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  36.51 
 
 
435 aa  155  8e-37  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_3555  putative ABC transporter permease protein  35.05 
 
 
317 aa  155  8e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.34254  normal 
 
 
-
 
NC_009832  Spro_2525  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
330 aa  154  2e-36  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  32.48 
 
 
330 aa  153  2.9999999999999998e-36  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
NC_013131  Caci_2109  binding-protein-dependent transport systems inner membrane component  32.55 
 
 
312 aa  152  5.9999999999999996e-36  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.376983 
 
 
-
 
NC_011369  Rleg2_3122  binding-protein-dependent transport systems inner membrane component  38.78 
 
 
294 aa  152  7e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3394  binding-protein-dependent transport systems inner membrane component  39.18 
 
 
294 aa  152  8e-36  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.181077 
 
 
-
 
NC_010511  M446_0821  binding-protein-dependent transport systems inner membrane component  36.69 
 
 
314 aa  151  1e-35  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
320 aa  151  1e-35  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_007005  Psyr_0761  binding-protein dependent transport system inner membrane protein  33.79 
 
 
320 aa  150  2e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0629996  normal  0.824676 
 
 
-
 
NC_012848  Rleg_4864  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
319 aa  150  3e-35  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.243677  normal  0.263269 
 
 
-
 
NC_013131  Caci_3596  binding-protein-dependent transport systems inner membrane component  31.71 
 
 
325 aa  150  3e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.295531  normal 
 
 
-
 
NC_010003  Pmob_0028  binding-protein-dependent transport systems inner membrane component  35.07 
 
 
300 aa  149  6e-35  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000378352  n/a   
 
 
-
 
NC_009380  Strop_0804  binding-protein-dependent transport systems inner membrane component  32.57 
 
 
337 aa  148  1.0000000000000001e-34  Salinispora tropica CNB-440  Bacteria  normal  0.606963  normal 
 
 
-
 
NC_010483  TRQ2_0971  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
293 aa  147  2.0000000000000003e-34  Thermotoga sp. RQ2  Bacteria  normal  0.0994152  n/a   
 
 
-
 
NC_009486  Tpet_0955  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
293 aa  147  2.0000000000000003e-34  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3896  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
289 aa  147  2.0000000000000003e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0438989  n/a   
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  31.31 
 
 
328 aa  146  4.0000000000000006e-34  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
320 aa  146  5e-34  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_009620  Smed_4556  binding-protein-dependent transport systems inner membrane component  36.26 
 
 
293 aa  145  7.0000000000000006e-34  Sinorhizobium medicae WSM419  Bacteria  normal  0.357658  normal 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
319 aa  145  8.000000000000001e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_2941  binding-protein-dependent transport systems inner membrane component  31.36 
 
 
320 aa  145  1e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.974377  n/a   
 
 
-
 
NC_013093  Amir_0349  binding-protein-dependent transport systems inner membrane component  34.64 
 
 
305 aa  144  2e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_02940  carbohydrate ABC transporter membrane protein  34.04 
 
 
318 aa  144  2e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2291  binding-protein-dependent transport systems inner membrane component  36.43 
 
 
311 aa  144  2e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.276592  normal 
 
 
-
 
NC_011369  Rleg2_3668  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
299 aa  144  2e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0398  binding-protein-dependent transport systems inner membrane component  30.47 
 
 
312 aa  144  3e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012858  Rleg_6793  binding-protein-dependent transport systems inner membrane component  33.01 
 
 
320 aa  143  3e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.934129  normal 
 
 
-
 
NC_013131  Caci_6903  binding-protein-dependent transport systems inner membrane component  29.24 
 
 
324 aa  142  5e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0156181  normal  0.0141251 
 
 
-
 
NC_012669  Bcav_1681  binding-protein-dependent transport systems inner membrane component  30.82 
 
 
316 aa  142  5e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.130846  normal 
 
 
-
 
NC_008243  Meso_4516  binding-protein-dependent transport systems inner membrane component  30.88 
 
 
290 aa  142  5e-33  Chelativorans sp. BNC1  Bacteria  normal  0.0463372  n/a   
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  32.4 
 
 
293 aa  142  5e-33  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_011145  AnaeK_4266  binding-protein-dependent transport systems inner membrane component  31.88 
 
 
569 aa  142  6e-33  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1259  binding-protein-dependent transport systems inner membrane component  34.93 
 
 
300 aa  142  8e-33  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_20460  binding-protein-dependent transport systems inner membrane component  29.29 
 
 
321 aa  142  9e-33  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.00000522199  n/a   
 
 
-
 
NC_007760  Adeh_4135  ABC sugar transporter, inner membrane subunit  31.96 
 
 
569 aa  141  9.999999999999999e-33  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_4288  binding-protein-dependent transport systems inner membrane component  31.88 
 
 
569 aa  141  9.999999999999999e-33  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0305  sugar ABC transporter, permease protein  31.01 
 
 
325 aa  140  1.9999999999999998e-32  Brucella suis 1330  Bacteria  normal  0.0474821  n/a   
 
 
-
 
NC_013526  Tter_2702  binding-protein-dependent transport systems inner membrane component  32.07 
 
 
303 aa  141  1.9999999999999998e-32  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000107193  n/a   
 
 
-
 
NC_008786  Veis_1880  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
286 aa  140  1.9999999999999998e-32  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.262739  normal  0.333569 
 
 
-
 
NC_009504  BOV_A0280  sugar ABC transporter, permease protein  31.01 
 
 
325 aa  140  1.9999999999999998e-32  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3328  binding-protein-dependent transport systems inner membrane component  29.53 
 
 
304 aa  140  1.9999999999999998e-32  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_3774  binding-protein-dependent transport systems inner membrane component  30.85 
 
 
319 aa  139  3.9999999999999997e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.198584  normal 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  30.63 
 
 
318 aa  139  6e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_013440  Hoch_3145  binding-protein-dependent transport systems inner membrane component  30.61 
 
 
303 aa  139  7e-32  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.236219 
 
 
-
 
NC_004578  PSPTO_0888  sugar ABC transporter, permease protein  33.45 
 
 
320 aa  138  1e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.392731  n/a   
 
 
-
 
NC_012853  Rleg_5697  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
305 aa  138  1e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.121734 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  30.58 
 
 
312 aa  138  1e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_011368  Rleg2_5475  binding-protein-dependent transport systems inner membrane component  32.25 
 
 
312 aa  138  1e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.44322 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  31.6 
 
 
309 aa  138  1e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013172  Bfae_01820  permease component of ABC-type sugar transporter  30.61 
 
 
312 aa  137  2e-31  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5212  binding-protein-dependent transport systems inner membrane component  32.25 
 
 
312 aa  137  2e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.481723 
 
 
-
 
NC_013093  Amir_1844  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
291 aa  137  3.0000000000000003e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  0.476032  n/a   
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
312 aa  137  3.0000000000000003e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_010003  Pmob_0524  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
303 aa  137  3.0000000000000003e-31  Petrotoga mobilis SJ95  Bacteria  normal  0.693678  n/a   
 
 
-
 
NC_007802  Jann_3554  binding-protein-dependent transport systems inner membrane component  32.26 
 
 
311 aa  136  4e-31  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3466  binding-protein-dependent transport systems inner membrane component  30.56 
 
 
342 aa  136  4e-31  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5492  binding-protein-dependent transport systems inner membrane component  29.73 
 
 
328 aa  136  5e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.511246  normal  0.17987 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  30.22 
 
 
313 aa  136  5e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_011899  Hore_15030  binding-protein-dependent transport systems inner membrane component  31.27 
 
 
289 aa  134  9.999999999999999e-31  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0172  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
324 aa  135  9.999999999999999e-31  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2959  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
434 aa  134  9.999999999999999e-31  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0805194  n/a   
 
 
-
 
NC_013421  Pecwa_1320  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
434 aa  134  9.999999999999999e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  0.321856  n/a   
 
 
-
 
NC_009486  Tpet_0117  binding-protein-dependent transport systems inner membrane component  30.93 
 
 
300 aa  135  9.999999999999999e-31  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0115  binding-protein-dependent transport systems inner membrane component  30.93 
 
 
300 aa  135  9.999999999999999e-31  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1501  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
304 aa  135  9.999999999999999e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.707606 
 
 
-
 
NC_013923  Nmag_3872  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
315 aa  134  9.999999999999999e-31  Natrialba magadii ATCC 43099  Archaea  normal  0.0566045  n/a   
 
 
-
 
NC_009972  Haur_4564  binding-protein-dependent transport systems inner membrane component  30.89 
 
 
345 aa  135  9.999999999999999e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
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