More than 300 homologs were found in PanDaTox collection
for query gene Rpal_3959 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_3959  binding-protein-dependent transport systems inner membrane component  100 
 
 
315 aa  627  1e-178  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3321  binding-protein-dependent transport systems inner membrane component  91.8 
 
 
317 aa  581  1.0000000000000001e-165  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5641  normal 
 
 
-
 
NC_007778  RPB_2098  binding-protein-dependent transport systems inner membrane component  91.48 
 
 
317 aa  578  1e-164  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.529199  hitchhiker  0.000478367 
 
 
-
 
NC_007925  RPC_3645  binding-protein-dependent transport systems inner membrane component  89.31 
 
 
318 aa  570  1e-161  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.415839 
 
 
-
 
NC_009485  BBta_3555  putative ABC transporter permease protein  91.36 
 
 
317 aa  560  1e-158  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.34254  normal 
 
 
-
 
NC_011894  Mnod_1414  binding-protein-dependent transport systems inner membrane component  80.07 
 
 
314 aa  501  1e-141  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2891  binding-protein-dependent transport systems inner membrane component  79.67 
 
 
318 aa  484  1e-135  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.400754  normal  0.350094 
 
 
-
 
NC_010511  M446_0821  binding-protein-dependent transport systems inner membrane component  78.88 
 
 
314 aa  478  1e-134  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5336  binding-protein-dependent transport systems inner membrane component  73.22 
 
 
310 aa  441  1e-123  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.369054 
 
 
-
 
NC_011366  Rleg2_5714  binding-protein-dependent transport systems inner membrane component  72.88 
 
 
310 aa  441  1e-123  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.568061 
 
 
-
 
NC_009620  Smed_4329  binding-protein-dependent transport systems inner membrane component  72.76 
 
 
309 aa  431  1e-119  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0434884 
 
 
-
 
NC_009720  Xaut_0501  binding-protein-dependent transport systems inner membrane component  73 
 
 
365 aa  422  1e-117  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1259  binding-protein-dependent transport systems inner membrane component  67.45 
 
 
300 aa  382  1e-105  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  36.43 
 
 
292 aa  177  1e-43  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  35.58 
 
 
307 aa  176  3e-43  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_007973  Rmet_0009  binding-protein-dependent transport systems inner membrane component  38.08 
 
 
310 aa  176  4e-43  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3596  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
325 aa  175  9e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.295531  normal 
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
312 aa  173  2.9999999999999996e-42  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_013131  Caci_6903  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
324 aa  170  3e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0156181  normal  0.0141251 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  39 
 
 
435 aa  170  4e-41  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012858  Rleg_6633  binding-protein-dependent transport systems inner membrane component  36 
 
 
294 aa  169  6e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.61386 
 
 
-
 
NC_011366  Rleg2_5689  binding-protein-dependent transport systems inner membrane component  36.17 
 
 
294 aa  168  1e-40  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0398  binding-protein-dependent transport systems inner membrane component  39.36 
 
 
312 aa  166  4e-40  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_04590  binding-protein-dependent transport systems inner membrane component  38.34 
 
 
294 aa  166  5e-40  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1990  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
306 aa  166  5e-40  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.306567  n/a   
 
 
-
 
NC_009620  Smed_3590  binding-protein-dependent transport systems inner membrane component  38.08 
 
 
301 aa  165  9e-40  Sinorhizobium medicae WSM419  Bacteria  normal  0.657903  normal 
 
 
-
 
NC_012848  Rleg_4864  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
319 aa  164  2.0000000000000002e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.243677  normal  0.263269 
 
 
-
 
NC_013131  Caci_2610  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
334 aa  164  2.0000000000000002e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.17709  normal 
 
 
-
 
NC_011899  Hore_00790  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
262 aa  164  2.0000000000000002e-39  Halothermothrix orenii H 168  Bacteria  normal  0.772214  n/a   
 
 
-
 
NC_007964  Nham_1208  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
314 aa  163  3e-39  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3315  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
314 aa  163  4.0000000000000004e-39  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.453212  n/a   
 
 
-
 
NC_009620  Smed_4642  binding-protein-dependent transport systems inner membrane component  34.84 
 
 
294 aa  162  5.0000000000000005e-39  Sinorhizobium medicae WSM419  Bacteria  normal  0.288658  normal  0.0756683 
 
 
-
 
NC_011145  AnaeK_3229  binding-protein-dependent transport systems inner membrane component  32.86 
 
 
314 aa  162  6e-39  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0449  binding-protein-dependent transport systems inner membrane component  36.27 
 
 
295 aa  162  6e-39  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.982578  n/a   
 
 
-
 
NC_007760  Adeh_3121  ABC sugar transporter, inner membrane subunit  32.5 
 
 
317 aa  162  7e-39  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3668  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
299 aa  161  1e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
296 aa  160  3e-38  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_009675  Anae109_1663  binding-protein-dependent transport systems inner membrane component  35.48 
 
 
310 aa  159  6e-38  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0803077  normal 
 
 
-
 
NC_011988  Avi_6238  ABC transporter membrane spanning protein (maltose)  34.84 
 
 
294 aa  159  7e-38  Agrobacterium vitis S4  Bacteria  normal  0.602267  n/a   
 
 
-
 
NC_007778  RPB_2547  binding-protein dependent transport system inner membrane protein  33.69 
 
 
312 aa  159  8e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.194318  normal 
 
 
-
 
NC_014211  Ndas_4929  binding-protein-dependent transport systems inner membrane component  32.96 
 
 
311 aa  158  1e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.155715  normal 
 
 
-
 
NC_007952  Bxe_B0419  ABC sugar transporter, inner membrane subunit  32.06 
 
 
296 aa  157  2e-37  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0404  ABC sugar transporter, inner membrane subunit  34.14 
 
 
294 aa  157  3e-37  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_7207  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
296 aa  157  3e-37  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  31.01 
 
 
317 aa  157  3e-37  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_010003  Pmob_0028  binding-protein-dependent transport systems inner membrane component  35.09 
 
 
300 aa  155  6e-37  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000378352  n/a   
 
 
-
 
NC_010483  TRQ2_0971  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
293 aa  155  6e-37  Thermotoga sp. RQ2  Bacteria  normal  0.0994152  n/a   
 
 
-
 
NC_009486  Tpet_0955  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
293 aa  155  6e-37  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2909  binding-protein-dependent transport systems inner membrane component  35.57 
 
 
348 aa  154  1e-36  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.120786  normal  0.0549624 
 
 
-
 
NC_009485  BBta_4118  putative permease protein of sugar ABC transporter  34.51 
 
 
312 aa  155  1e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.15121  normal  0.31936 
 
 
-
 
NC_010623  Bphy_4058  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
309 aa  154  1e-36  Burkholderia phymatum STM815  Bacteria  normal  normal  0.801646 
 
 
-
 
NC_008786  Veis_1880  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
286 aa  153  2.9999999999999998e-36  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.262739  normal  0.333569 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
427 aa  153  2.9999999999999998e-36  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_014165  Tbis_1885  binding-protein-dependent transporter inner membrane component  35.48 
 
 
317 aa  152  5e-36  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.44963 
 
 
-
 
NC_012669  Bcav_1699  binding-protein-dependent transport systems inner membrane component  36.17 
 
 
315 aa  152  5e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.258357  normal 
 
 
-
 
NC_013923  Nmag_3872  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
315 aa  152  7e-36  Natrialba magadii ATCC 43099  Archaea  normal  0.0566045  n/a   
 
 
-
 
NC_008699  Noca_1419  binding-protein-dependent transport systems inner membrane component  32.89 
 
 
314 aa  152  7e-36  Nocardioides sp. JS614  Bacteria  normal  0.906597  n/a   
 
 
-
 
NC_012669  Bcav_1681  binding-protein-dependent transport systems inner membrane component  30.5 
 
 
316 aa  151  1e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.130846  normal 
 
 
-
 
NC_011368  Rleg2_5475  binding-protein-dependent transport systems inner membrane component  31.02 
 
 
312 aa  150  2e-35  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.44322 
 
 
-
 
NC_007802  Jann_3554  binding-protein-dependent transport systems inner membrane component  36.79 
 
 
311 aa  150  3e-35  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  33.91 
 
 
303 aa  150  4e-35  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  34.57 
 
 
304 aa  149  6e-35  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_008541  Arth_3466  binding-protein-dependent transport systems inner membrane component  34.22 
 
 
342 aa  149  9e-35  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_19880  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
323 aa  148  1.0000000000000001e-34  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2208  binding-protein-dependent transport systems inner membrane component  32.69 
 
 
306 aa  148  1.0000000000000001e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.739705  n/a   
 
 
-
 
NC_011366  Rleg2_5851  binding-protein-dependent transport systems inner membrane component  36.22 
 
 
311 aa  148  1.0000000000000001e-34  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.421015  normal 
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
315 aa  148  1.0000000000000001e-34  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2817  binding-protein-dependent transport systems inner membrane component  31.92 
 
 
310 aa  148  1.0000000000000001e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.822068  normal 
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
324 aa  147  2.0000000000000003e-34  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  32.04 
 
 
320 aa  147  2.0000000000000003e-34  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_011886  Achl_1752  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
314 aa  147  2.0000000000000003e-34  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000089983 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  34.28 
 
 
319 aa  147  3e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_02940  carbohydrate ABC transporter membrane protein  33.45 
 
 
318 aa  147  3e-34  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_01820  permease component of ABC-type sugar transporter  29.07 
 
 
312 aa  146  5e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  32.71 
 
 
310 aa  146  5e-34  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  32.28 
 
 
293 aa  146  5e-34  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_009654  Mmwyl1_2009  binding-protein-dependent transport systems inner membrane component  29.49 
 
 
291 aa  145  9e-34  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0386  binding-protein-dependent transport systems inner membrane component  32.78 
 
 
304 aa  145  9e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.610758  normal  0.0357706 
 
 
-
 
NC_011894  Mnod_5668  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
315 aa  144  2e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3673  ABC sugar transporter, inner membrane subunit  29.53 
 
 
308 aa  144  2e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.246744  n/a   
 
 
-
 
NC_013739  Cwoe_5096  binding-protein-dependent transport systems inner membrane component  36.94 
 
 
290 aa  144  2e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.339956 
 
 
-
 
NC_009050  Rsph17029_3408  binding-protein-dependent transport systems inner membrane component  29.53 
 
 
308 aa  144  2e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.166359  normal  0.855546 
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
330 aa  144  2e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
NC_013093  Amir_0349  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
305 aa  144  2e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0524  binding-protein-dependent transport systems inner membrane component  34.64 
 
 
303 aa  144  2e-33  Petrotoga mobilis SJ95  Bacteria  normal  0.693678  n/a   
 
 
-
 
NC_009636  Smed_2698  binding-protein-dependent transport systems inner membrane component  32.94 
 
 
295 aa  144  2e-33  Sinorhizobium medicae WSM419  Bacteria  normal  0.0832027  normal 
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  32.32 
 
 
320 aa  144  2e-33  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_012858  Rleg_6764  binding-protein-dependent transport systems inner membrane component  35.04 
 
 
326 aa  144  2e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_2941  binding-protein-dependent transport systems inner membrane component  32.79 
 
 
320 aa  144  2e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.974377  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  34.7 
 
 
287 aa  143  3e-33  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5212  binding-protein-dependent transport systems inner membrane component  31.31 
 
 
312 aa  144  3e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.481723 
 
 
-
 
NC_008243  Meso_4516  binding-protein-dependent transport systems inner membrane component  31.12 
 
 
290 aa  143  5e-33  Chelativorans sp. BNC1  Bacteria  normal  0.0463372  n/a   
 
 
-
 
NC_013595  Sros_6194  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
303 aa  143  5e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.209211  normal  0.916696 
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  31.42 
 
 
328 aa  142  7e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  29.86 
 
 
309 aa  142  8e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_1775  binding-protein-dependent transport systems inner membrane component  31.92 
 
 
309 aa  142  9e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  0.114297  normal  0.0929805 
 
 
-
 
NC_013526  Tter_2702  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
303 aa  142  9.999999999999999e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000107193  n/a   
 
 
-
 
NC_013947  Snas_2291  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
311 aa  141  9.999999999999999e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.276592  normal 
 
 
-
 
NC_014212  Mesil_1016  binding-protein-dependent transport systems inner membrane component  38.57 
 
 
301 aa  142  9.999999999999999e-33  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  32.6 
 
 
299 aa  140  1.9999999999999998e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
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