More than 300 homologs were found in PanDaTox collection
for query gene Smed_4329 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_4329  binding-protein-dependent transport systems inner membrane component  100 
 
 
309 aa  612  9.999999999999999e-175  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0434884 
 
 
-
 
NC_012848  Rleg_5336  binding-protein-dependent transport systems inner membrane component  89.9 
 
 
310 aa  558  1e-158  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.369054 
 
 
-
 
NC_011366  Rleg2_5714  binding-protein-dependent transport systems inner membrane component  89.03 
 
 
310 aa  553  1e-157  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.568061 
 
 
-
 
NC_009720  Xaut_0501  binding-protein-dependent transport systems inner membrane component  80.19 
 
 
365 aa  476  1e-133  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3555  putative ABC transporter permease protein  73.6 
 
 
317 aa  456  1e-127  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.34254  normal 
 
 
-
 
NC_007778  RPB_2098  binding-protein-dependent transport systems inner membrane component  72.7 
 
 
317 aa  449  1e-125  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.529199  hitchhiker  0.000478367 
 
 
-
 
NC_007925  RPC_3645  binding-protein-dependent transport systems inner membrane component  72.49 
 
 
318 aa  445  1.0000000000000001e-124  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.415839 
 
 
-
 
NC_007958  RPD_3321  binding-protein-dependent transport systems inner membrane component  71.34 
 
 
317 aa  445  1.0000000000000001e-124  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5641  normal 
 
 
-
 
NC_011004  Rpal_3959  binding-protein-dependent transport systems inner membrane component  72.76 
 
 
315 aa  444  1.0000000000000001e-124  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1259  binding-protein-dependent transport systems inner membrane component  74.24 
 
 
300 aa  422  1e-117  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1414  binding-protein-dependent transport systems inner membrane component  69.18 
 
 
314 aa  422  1e-117  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2891  binding-protein-dependent transport systems inner membrane component  68.08 
 
 
318 aa  416  9.999999999999999e-116  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.400754  normal  0.350094 
 
 
-
 
NC_010511  M446_0821  binding-protein-dependent transport systems inner membrane component  71.23 
 
 
314 aa  403  1e-111  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0009  binding-protein-dependent transport systems inner membrane component  39.44 
 
 
310 aa  196  3e-49  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_3315  binding-protein-dependent transport systems inner membrane component  37.64 
 
 
314 aa  193  2e-48  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.453212  n/a   
 
 
-
 
NC_011145  AnaeK_3229  binding-protein-dependent transport systems inner membrane component  37.64 
 
 
314 aa  193  3e-48  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3121  ABC sugar transporter, inner membrane subunit  37.27 
 
 
317 aa  192  6e-48  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2547  binding-protein dependent transport system inner membrane protein  37.11 
 
 
312 aa  192  6e-48  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.194318  normal 
 
 
-
 
NC_009675  Anae109_1663  binding-protein-dependent transport systems inner membrane component  41.08 
 
 
310 aa  189  8e-47  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0803077  normal 
 
 
-
 
NC_011366  Rleg2_5689  binding-protein-dependent transport systems inner membrane component  35.76 
 
 
294 aa  187  3e-46  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6633  binding-protein-dependent transport systems inner membrane component  35.76 
 
 
294 aa  186  5e-46  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.61386 
 
 
-
 
NC_007958  RPD_2909  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
348 aa  185  9e-46  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.120786  normal  0.0549624 
 
 
-
 
NC_007964  Nham_1208  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
314 aa  182  5.0000000000000004e-45  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
296 aa  182  5.0000000000000004e-45  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_009485  BBta_4118  putative permease protein of sugar ABC transporter  37.97 
 
 
312 aa  182  9.000000000000001e-45  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.15121  normal  0.31936 
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  39.35 
 
 
292 aa  181  1e-44  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
312 aa  181  2e-44  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  37.84 
 
 
307 aa  179  5.999999999999999e-44  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_013131  Caci_6903  binding-protein-dependent transport systems inner membrane component  36.14 
 
 
324 aa  178  8e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0156181  normal  0.0141251 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  38.31 
 
 
427 aa  177  2e-43  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_011366  Rleg2_5851  binding-protein-dependent transport systems inner membrane component  40.54 
 
 
311 aa  175  9e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.421015  normal 
 
 
-
 
NC_012848  Rleg_4864  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
319 aa  174  9.999999999999999e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.243677  normal  0.263269 
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  40.95 
 
 
435 aa  172  5.999999999999999e-42  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007802  Jann_3554  binding-protein-dependent transport systems inner membrane component  38.97 
 
 
311 aa  171  1e-41  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_6238  ABC transporter membrane spanning protein (maltose)  34.4 
 
 
294 aa  171  1e-41  Agrobacterium vitis S4  Bacteria  normal  0.602267  n/a   
 
 
-
 
NC_013525  Tter_0398  binding-protein-dependent transport systems inner membrane component  37.55 
 
 
312 aa  172  1e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_04590  binding-protein-dependent transport systems inner membrane component  39.29 
 
 
294 aa  171  2e-41  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3668  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
299 aa  170  2e-41  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0028  binding-protein-dependent transport systems inner membrane component  37.08 
 
 
300 aa  170  3e-41  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000378352  n/a   
 
 
-
 
NC_012858  Rleg_6764  binding-protein-dependent transport systems inner membrane component  39 
 
 
326 aa  170  3e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1419  binding-protein-dependent transport systems inner membrane component  33.96 
 
 
314 aa  170  3e-41  Nocardioides sp. JS614  Bacteria  normal  0.906597  n/a   
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
315 aa  168  1e-40  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4642  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
294 aa  167  1e-40  Sinorhizobium medicae WSM419  Bacteria  normal  0.288658  normal  0.0756683 
 
 
-
 
NC_009667  Oant_0353  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
317 aa  167  1e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0740262  n/a   
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  34.42 
 
 
330 aa  164  2.0000000000000002e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
NC_013947  Snas_2291  binding-protein-dependent transport systems inner membrane component  37.72 
 
 
311 aa  164  2.0000000000000002e-39  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.276592  normal 
 
 
-
 
NC_009636  Smed_2421  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
311 aa  164  2.0000000000000002e-39  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.224374 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
304 aa  164  2.0000000000000002e-39  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_014158  Tpau_1637  binding-protein-dependent transport systems inner membrane component  35.92 
 
 
303 aa  163  3e-39  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.0695484  n/a   
 
 
-
 
NC_010623  Bphy_4058  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
309 aa  162  6e-39  Burkholderia phymatum STM815  Bacteria  normal  normal  0.801646 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  38.36 
 
 
309 aa  161  1e-38  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_010676  Bphyt_7207  binding-protein-dependent transport systems inner membrane component  31.45 
 
 
296 aa  161  1e-38  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_00790  binding-protein-dependent transport systems inner membrane component  35.53 
 
 
262 aa  161  1e-38  Halothermothrix orenii H 168  Bacteria  normal  0.772214  n/a   
 
 
-
 
NC_013093  Amir_0349  binding-protein-dependent transport systems inner membrane component  35.69 
 
 
305 aa  160  2e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B0419  ABC sugar transporter, inner membrane subunit  31.45 
 
 
296 aa  160  2e-38  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008243  Meso_4516  binding-protein-dependent transport systems inner membrane component  33.57 
 
 
290 aa  160  3e-38  Chelativorans sp. BNC1  Bacteria  normal  0.0463372  n/a   
 
 
-
 
NC_008346  Swol_0404  ABC sugar transporter, inner membrane subunit  34.59 
 
 
294 aa  160  3e-38  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2610  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
334 aa  160  3e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.17709  normal 
 
 
-
 
NC_013131  Caci_3596  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
325 aa  159  4e-38  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.295531  normal 
 
 
-
 
NC_009620  Smed_3590  binding-protein-dependent transport systems inner membrane component  37 
 
 
301 aa  159  5e-38  Sinorhizobium medicae WSM419  Bacteria  normal  0.657903  normal 
 
 
-
 
NC_009718  Fnod_0449  binding-protein-dependent transport systems inner membrane component  35.13 
 
 
295 aa  159  5e-38  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.982578  n/a   
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  34.48 
 
 
324 aa  159  6e-38  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008698  Tpen_1618  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
283 aa  158  9e-38  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_009953  Sare_0748  binding-protein-dependent transport systems inner membrane component  31.63 
 
 
337 aa  157  1e-37  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00168888 
 
 
-
 
NC_013131  Caci_2109  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
312 aa  157  2e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.376983 
 
 
-
 
NC_014165  Tbis_1885  binding-protein-dependent transporter inner membrane component  33.9 
 
 
317 aa  157  2e-37  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.44963 
 
 
-
 
NC_014211  Ndas_4929  binding-protein-dependent transport systems inner membrane component  32.53 
 
 
311 aa  157  3e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.155715  normal 
 
 
-
 
NC_013923  Nmag_3872  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
315 aa  156  3e-37  Natrialba magadii ATCC 43099  Archaea  normal  0.0566045  n/a   
 
 
-
 
NC_009636  Smed_0187  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
307 aa  155  9e-37  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0117  binding-protein-dependent transport systems inner membrane component  34.24 
 
 
300 aa  155  1e-36  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_02940  carbohydrate ABC transporter membrane protein  34.83 
 
 
318 aa  154  1e-36  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0115  binding-protein-dependent transport systems inner membrane component  34.24 
 
 
300 aa  155  1e-36  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2525  binding-protein-dependent transport systems inner membrane component  32.08 
 
 
330 aa  154  1e-36  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_11610  carbohydrate ABC transporter membrane protein  38.13 
 
 
295 aa  154  2e-36  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.798667 
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  35.58 
 
 
319 aa  153  2.9999999999999998e-36  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_01820  permease component of ABC-type sugar transporter  30.64 
 
 
312 aa  153  4e-36  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1880  binding-protein-dependent transport systems inner membrane component  36.48 
 
 
286 aa  153  4e-36  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.262739  normal  0.333569 
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  33.92 
 
 
293 aa  152  5.9999999999999996e-36  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_010524  Lcho_3328  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
304 aa  152  7e-36  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010483  TRQ2_0971  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
293 aa  152  7e-36  Thermotoga sp. RQ2  Bacteria  normal  0.0994152  n/a   
 
 
-
 
NC_009486  Tpet_0955  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
293 aa  152  7e-36  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1549  MalF-type ABC sugar transport systems permease component  31.25 
 
 
317 aa  152  8e-36  Bifidobacterium longum DJO10A  Bacteria  normal  0.649517  n/a   
 
 
-
 
NC_013093  Amir_1844  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
291 aa  151  1e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  0.476032  n/a   
 
 
-
 
NC_007494  RSP_3673  ABC sugar transporter, inner membrane subunit  32.06 
 
 
308 aa  150  2e-35  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.246744  n/a   
 
 
-
 
NC_009050  Rsph17029_3408  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
308 aa  150  2e-35  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.166359  normal  0.855546 
 
 
-
 
NC_011899  Hore_20510  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
290 aa  150  2e-35  Halothermothrix orenii H 168  Bacteria  normal  0.0790749  n/a   
 
 
-
 
NC_002977  MCA1942  sugar ABC transporter, permease protein  37.16 
 
 
287 aa  149  4e-35  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0524  binding-protein-dependent transport systems inner membrane component  34.14 
 
 
303 aa  149  5e-35  Petrotoga mobilis SJ95  Bacteria  normal  0.693678  n/a   
 
 
-
 
NC_013595  Sros_3340  binding-protein-dependent transport systems inner membrane component  37.05 
 
 
338 aa  149  6e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  0.781064  normal  0.179396 
 
 
-
 
NC_013526  Tter_2702  binding-protein-dependent transport systems inner membrane component  35.46 
 
 
303 aa  149  6e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000107193  n/a   
 
 
-
 
NC_013525  Tter_0830  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
309 aa  149  6e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_0016  binding-protein-dependent transport systems inner membrane component  33.57 
 
 
311 aa  149  7e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17058  normal 
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  31.83 
 
 
320 aa  149  8e-35  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_013440  Hoch_3145  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
303 aa  148  1.0000000000000001e-34  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.236219 
 
 
-
 
NC_012669  Bcav_1681  binding-protein-dependent transport systems inner membrane component  32.04 
 
 
316 aa  148  1.0000000000000001e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.130846  normal 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
307 aa  147  2.0000000000000003e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_013595  Sros_2365  sugar ABC transporter, permease protein  31.49 
 
 
288 aa  147  2.0000000000000003e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.216835  normal 
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  32.74 
 
 
320 aa  147  2.0000000000000003e-34  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_009664  Krad_0386  binding-protein-dependent transport systems inner membrane component  34.86 
 
 
304 aa  147  2.0000000000000003e-34  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.610758  normal  0.0357706 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  30 
 
 
312 aa  147  2.0000000000000003e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
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