More than 300 homologs were found in PanDaTox collection
for query gene Smed_4556 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_4556  binding-protein-dependent transport systems inner membrane component  100 
 
 
293 aa  571  1.0000000000000001e-162  Sinorhizobium medicae WSM419  Bacteria  normal  0.357658  normal 
 
 
-
 
NC_011369  Rleg2_3122  binding-protein-dependent transport systems inner membrane component  88.74 
 
 
294 aa  461  1e-129  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3394  binding-protein-dependent transport systems inner membrane component  88.4 
 
 
294 aa  448  1e-125  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.181077 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  57.14 
 
 
304 aa  295  6e-79  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  43.31 
 
 
307 aa  229  5e-59  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  47.01 
 
 
309 aa  228  7e-59  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  43.8 
 
 
330 aa  220  1.9999999999999999e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  38.57 
 
 
324 aa  209  3e-53  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  39.86 
 
 
296 aa  202  4e-51  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_013525  Tter_0398  binding-protein-dependent transport systems inner membrane component  38.35 
 
 
312 aa  196  4.0000000000000005e-49  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013202  Hmuk_0943  binding-protein-dependent transport systems inner membrane component  36.59 
 
 
312 aa  195  9e-49  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.301949 
 
 
-
 
NC_011899  Hore_00790  binding-protein-dependent transport systems inner membrane component  39.53 
 
 
262 aa  194  1e-48  Halothermothrix orenii H 168  Bacteria  normal  0.772214  n/a   
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  42.19 
 
 
435 aa  193  3e-48  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_004311  BRA0305  sugar ABC transporter, permease protein  36.81 
 
 
325 aa  190  2.9999999999999997e-47  Brucella suis 1330  Bacteria  normal  0.0474821  n/a   
 
 
-
 
NC_009486  Tpet_0955  binding-protein-dependent transport systems inner membrane component  37.46 
 
 
293 aa  190  2.9999999999999997e-47  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0971  binding-protein-dependent transport systems inner membrane component  37.46 
 
 
293 aa  190  2.9999999999999997e-47  Thermotoga sp. RQ2  Bacteria  normal  0.0994152  n/a   
 
 
-
 
NC_009668  Oant_2941  binding-protein-dependent transport systems inner membrane component  36.12 
 
 
320 aa  190  2.9999999999999997e-47  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.974377  n/a   
 
 
-
 
NC_009620  Smed_4642  binding-protein-dependent transport systems inner membrane component  37.19 
 
 
294 aa  189  4e-47  Sinorhizobium medicae WSM419  Bacteria  normal  0.288658  normal  0.0756683 
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  37.86 
 
 
293 aa  188  7e-47  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_009832  Spro_2525  binding-protein-dependent transport systems inner membrane component  38.28 
 
 
330 aa  188  8e-47  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0280  sugar ABC transporter, permease protein  36.24 
 
 
325 aa  188  8e-47  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_0449  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
295 aa  186  4e-46  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.982578  n/a   
 
 
-
 
NC_011899  Hore_19880  binding-protein-dependent transport systems inner membrane component  35.55 
 
 
323 aa  185  8e-46  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  36.52 
 
 
328 aa  185  8e-46  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5689  binding-protein-dependent transport systems inner membrane component  35.48 
 
 
294 aa  183  2.0000000000000003e-45  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_6238  ABC transporter membrane spanning protein (maltose)  36.26 
 
 
294 aa  184  2.0000000000000003e-45  Agrobacterium vitis S4  Bacteria  normal  0.602267  n/a   
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  41.31 
 
 
292 aa  181  9.000000000000001e-45  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  35.13 
 
 
320 aa  181  2e-44  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_012858  Rleg_6633  binding-protein-dependent transport systems inner membrane component  35.13 
 
 
294 aa  179  4e-44  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.61386 
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  37.24 
 
 
427 aa  179  4.999999999999999e-44  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_013440  Hoch_3145  binding-protein-dependent transport systems inner membrane component  36.57 
 
 
303 aa  176  4e-43  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.236219 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  34.53 
 
 
312 aa  176  4e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  33.89 
 
 
320 aa  176  6e-43  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_007005  Psyr_0761  binding-protein dependent transport system inner membrane protein  38.54 
 
 
320 aa  175  8e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0629996  normal  0.824676 
 
 
-
 
NC_011368  Rleg2_5492  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
328 aa  175  8e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.511246  normal  0.17987 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  33.1 
 
 
313 aa  175  9.999999999999999e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
312 aa  174  9.999999999999999e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_013739  Cwoe_0172  binding-protein-dependent transport systems inner membrane component  34.66 
 
 
324 aa  174  9.999999999999999e-43  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0353  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
317 aa  174  9.999999999999999e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0740262  n/a   
 
 
-
 
NC_008243  Meso_4516  binding-protein-dependent transport systems inner membrane component  33.56 
 
 
290 aa  171  1e-41  Chelativorans sp. BNC1  Bacteria  normal  0.0463372  n/a   
 
 
-
 
NC_010003  Pmob_0028  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
300 aa  171  1e-41  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000378352  n/a   
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
314 aa  171  2e-41  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_007494  RSP_3673  ABC sugar transporter, inner membrane subunit  39.5 
 
 
308 aa  169  4e-41  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.246744  n/a   
 
 
-
 
NC_009050  Rsph17029_3408  binding-protein-dependent transport systems inner membrane component  39.5 
 
 
308 aa  169  4e-41  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.166359  normal  0.855546 
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  33.68 
 
 
315 aa  169  7e-41  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1419  binding-protein-dependent transport systems inner membrane component  35.02 
 
 
314 aa  166  2.9999999999999998e-40  Nocardioides sp. JS614  Bacteria  normal  0.906597  n/a   
 
 
-
 
NC_008148  Rxyl_1990  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
306 aa  166  4e-40  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.306567  n/a   
 
 
-
 
NC_011368  Rleg2_4759  binding-protein-dependent transport systems inner membrane component  35.79 
 
 
305 aa  164  1.0000000000000001e-39  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.536489  normal 
 
 
-
 
NC_011894  Mnod_1414  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
314 aa  163  2.0000000000000002e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2000  binding-protein-dependent transport systems inner membrane component  31.69 
 
 
319 aa  164  2.0000000000000002e-39  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3227  extracellular solute-binding protein family 1  34.26 
 
 
307 aa  162  5.0000000000000005e-39  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00159401  normal  0.987884 
 
 
-
 
NC_012848  Rleg_5336  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
310 aa  162  5.0000000000000005e-39  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.369054 
 
 
-
 
NC_014213  Mesil_3421  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
307 aa  162  5.0000000000000005e-39  Meiothermus silvanus DSM 9946  Bacteria  normal  0.556907  normal 
 
 
-
 
NC_010524  Lcho_3328  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
304 aa  162  5.0000000000000005e-39  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  37.17 
 
 
310 aa  162  7e-39  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6764  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
326 aa  161  1e-38  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5739  ABC transporter permease  36.16 
 
 
318 aa  161  1e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.184804 
 
 
-
 
NC_009636  Smed_2421  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
311 aa  161  1e-38  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.224374 
 
 
-
 
NC_008025  Dgeo_0590  binding-protein-dependent transport systems inner membrane component  36.73 
 
 
315 aa  160  2e-38  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.273483  normal 
 
 
-
 
NC_011366  Rleg2_5714  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
310 aa  160  3e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.568061 
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
294 aa  159  4e-38  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5851  binding-protein-dependent transport systems inner membrane component  35.36 
 
 
311 aa  159  4e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.421015  normal 
 
 
-
 
NC_008786  Veis_3450  binding-protein-dependent transport systems inner membrane component  36.6 
 
 
307 aa  159  4e-38  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1755  ABC transporter permease  33.21 
 
 
312 aa  159  4e-38  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.576454  normal  0.392142 
 
 
-
 
NC_014165  Tbis_1885  binding-protein-dependent transporter inner membrane component  34.58 
 
 
317 aa  159  4e-38  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.44963 
 
 
-
 
NC_007778  RPB_2098  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
317 aa  159  7e-38  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.529199  hitchhiker  0.000478367 
 
 
-
 
NC_007925  RPC_3645  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
318 aa  158  1e-37  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.415839 
 
 
-
 
NC_012848  Rleg_5364  binding-protein-dependent transport systems inner membrane component  34.69 
 
 
305 aa  158  1e-37  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.402925 
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  35.51 
 
 
299 aa  158  1e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2089  binding-protein-dependent transport systems inner membrane component  39.78 
 
 
293 aa  157  2e-37  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.000000240561  normal  0.90976 
 
 
-
 
NC_009504  BOV_A0699  putative sugar ABC transporter, permease protein  33.45 
 
 
289 aa  157  2e-37  Brucella ovis ATCC 25840  Bacteria  normal  0.383075  n/a   
 
 
-
 
NC_004578  PSPTO_0888  sugar ABC transporter, permease protein  38.89 
 
 
320 aa  157  3e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.392731  n/a   
 
 
-
 
NC_007802  Jann_3554  binding-protein-dependent transport systems inner membrane component  37.28 
 
 
311 aa  156  3e-37  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3321  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
317 aa  156  3e-37  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5641  normal 
 
 
-
 
NC_014211  Ndas_4929  binding-protein-dependent transport systems inner membrane component  33.45 
 
 
311 aa  156  3e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.155715  normal 
 
 
-
 
NC_009620  Smed_4329  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
309 aa  156  5.0000000000000005e-37  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0434884 
 
 
-
 
NC_010676  Bphyt_7207  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
296 aa  155  6e-37  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0749  sugar ABC transporter, permease protein, putative  33.09 
 
 
289 aa  155  7e-37  Brucella suis 1330  Bacteria  normal  0.444567  n/a   
 
 
-
 
NC_013923  Nmag_3872  binding-protein-dependent transport systems inner membrane component  33.58 
 
 
315 aa  155  7e-37  Natrialba magadii ATCC 43099  Archaea  normal  0.0566045  n/a   
 
 
-
 
NC_009485  BBta_3555  putative ABC transporter permease protein  31.77 
 
 
317 aa  155  9e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.34254  normal 
 
 
-
 
NC_012853  Rleg_5697  binding-protein-dependent transport systems inner membrane component  32.45 
 
 
305 aa  155  1e-36  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.121734 
 
 
-
 
NC_007948  Bpro_1259  binding-protein-dependent transport systems inner membrane component  34.41 
 
 
300 aa  154  2e-36  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0079  ABC sugar transporter, inner membrane subunit  36.86 
 
 
304 aa  154  2e-36  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0419  ABC sugar transporter, inner membrane subunit  31.67 
 
 
296 aa  154  2e-36  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3668  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
299 aa  154  2e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1681  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
316 aa  154  2e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.130846  normal 
 
 
-
 
NC_012912  Dd1591_3241  binding-protein-dependent transport systems inner membrane component  34.96 
 
 
290 aa  154  2e-36  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2891  binding-protein-dependent transport systems inner membrane component  30.66 
 
 
318 aa  154  2e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.400754  normal  0.350094 
 
 
-
 
NC_009620  Smed_3590  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
301 aa  154  2e-36  Sinorhizobium medicae WSM419  Bacteria  normal  0.657903  normal 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  35.42 
 
 
313 aa  154  2e-36  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3959  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
315 aa  154  2e-36  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0821  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
314 aa  154  2e-36  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_1077  trehalose/maltose ABC transporter membrane protein  39.31 
 
 
288 aa  153  2.9999999999999998e-36  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4058  binding-protein-dependent transport systems inner membrane component  31.52 
 
 
309 aa  153  2.9999999999999998e-36  Burkholderia phymatum STM815  Bacteria  normal  normal  0.801646 
 
 
-
 
NC_009675  Anae109_1696  binding-protein-dependent transport systems inner membrane component  39.45 
 
 
291 aa  153  2.9999999999999998e-36  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00180742  normal 
 
 
-
 
NC_014151  Cfla_1127  binding-protein-dependent transport systems inner membrane component  32.73 
 
 
328 aa  153  4e-36  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.190953  hitchhiker  0.00155627 
 
 
-
 
NC_013521  Sked_00810  permease component of ABC-type sugar transporter  36.07 
 
 
305 aa  153  4e-36  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.0124807  normal  0.184811 
 
 
-
 
NC_009636  Smed_0187  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
307 aa  152  4e-36  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5668  binding-protein-dependent transport systems inner membrane component  35 
 
 
315 aa  153  4e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4864  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
319 aa  152  8e-36  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.243677  normal  0.263269 
 
 
-
 
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