214 homologs were found in PanDaTox collection
for query gene Rmet_3164 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_3164  phenylacetic acid degradation protein PaaD  100 
 
 
146 aa  304  3e-82  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.000726933  normal 
 
 
-
 
NC_007347  Reut_A3016  phenylacetic acid degradation-related protein:phenylacetic acid degradation protein PaaD  84.93 
 
 
178 aa  258  2e-68  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2751  phenylacetic acid degradation protein PaaD  77.14 
 
 
153 aa  235  2e-61  Ralstonia pickettii 12D  Bacteria  hitchhiker  0.00224854  normal 
 
 
-
 
NC_010682  Rpic_3116  phenylacetic acid degradation protein PaaD  76.43 
 
 
153 aa  234  2e-61  Ralstonia pickettii 12J  Bacteria  hitchhiker  0.00121794  normal  0.101093 
 
 
-
 
NC_003295  RSc2874  phenylacetic acid degradation protein  75.52 
 
 
155 aa  232  1.0000000000000001e-60  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.00122895  normal 
 
 
-
 
NC_007651  BTH_I2903  phenylacetic acid degradation protein PaaD  77.14 
 
 
154 aa  232  2.0000000000000002e-60  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.00325077  n/a   
 
 
-
 
NC_010084  Bmul_2854  phenylacetic acid degradation protein PaaD  76.6 
 
 
152 aa  231  3e-60  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0283833  normal  0.621321 
 
 
-
 
NC_007434  BURPS1710b_3567  phenylacetic acid degradation protein PaaI  78.83 
 
 
251 aa  230  5e-60  Burkholderia pseudomallei 1710b  Bacteria  normal  0.060136  n/a   
 
 
-
 
NC_007510  Bcep18194_A3627  phenylacetic acid degradation protein PaaD  74.47 
 
 
150 aa  229  8.000000000000001e-60  Burkholderia sp. 383  Bacteria  normal  0.0218071  normal 
 
 
-
 
NC_010508  Bcenmc03_0512  phenylacetic acid degradation protein PaaD  73.76 
 
 
150 aa  229  1e-59  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.245476  normal  0.787837 
 
 
-
 
NC_007951  Bxe_A0467  phenylacetic acid degradation- related thioesterase (PaaI)  75.89 
 
 
153 aa  229  1e-59  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2565  phenylacetic acid degradation protein PaaD  73.76 
 
 
150 aa  229  1e-59  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0540  phenylacetic acid degradation protein PaaD  73.76 
 
 
150 aa  229  1e-59  Burkholderia cenocepacia HI2424  Bacteria  normal  0.460721  n/a   
 
 
-
 
NC_010681  Bphyt_3489  phenylacetic acid degradation protein PaaD  76.6 
 
 
153 aa  229  1e-59  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00562362  hitchhiker  0.000228083 
 
 
-
 
NC_009074  BURPS668_3549  phenylacetic acid degradation protein PaaD  77.14 
 
 
158 aa  229  1e-59  Burkholderia pseudomallei 668  Bacteria  normal  0.0916225  n/a   
 
 
-
 
NC_009076  BURPS1106A_3576  phenylacetic acid degradation protein PaaD  77.14 
 
 
158 aa  229  1e-59  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0470  phenylacetic acid degradation protein PaaD  73.19 
 
 
150 aa  224  4e-58  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0904963  normal 
 
 
-
 
NC_008390  Bamb_0445  phenylacetic acid degradation protein PaaD  72.46 
 
 
150 aa  221  2e-57  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2692  phenylacetic acid degradation protein PaaD  73.94 
 
 
153 aa  218  1.9999999999999999e-56  Burkholderia phymatum STM815  Bacteria  normal  0.250107  normal 
 
 
-
 
NC_006349  BMAA0539.1  hypothetical protein  83.65 
 
 
159 aa  185  2e-46  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0622463  n/a   
 
 
-
 
NC_008835  BMA10229_0934  hypothetical protein  85.15 
 
 
104 aa  185  2e-46  Burkholderia mallei NCTC 10229  Bacteria  normal  0.431465  n/a   
 
 
-
 
NC_008784  BMASAVP1_0637  hypothetical protein  84.16 
 
 
104 aa  183  5e-46  Burkholderia mallei SAVP1  Bacteria  normal  0.0764989  n/a   
 
 
-
 
NC_011662  Tmz1t_1510  phenylacetic acid degradation protein PaaD  55.8 
 
 
155 aa  166  9e-41  Thauera sp. MZ1T  Bacteria  normal  0.269892  n/a   
 
 
-
 
NC_007298  Daro_0373  phenylacetic acid degradation-related protein:phenylacetic acid degradation protein PaaD  52.17 
 
 
156 aa  155  2e-37  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.000000506078  hitchhiker  0.00000423415 
 
 
-
 
NC_012791  Vapar_1237  phenylacetic acid degradation protein PaaD  54.35 
 
 
147 aa  151  2.9999999999999998e-36  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2871  phenylacetic acid degradation protein  56.74 
 
 
152 aa  150  5e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.165217  normal  0.133325 
 
 
-
 
NC_008688  Pden_4800  phenylacetic acid degradation protein PaaD  55.8 
 
 
154 aa  150  5.9999999999999996e-36  Paracoccus denitrificans PD1222  Bacteria  normal  0.283675  normal  0.204675 
 
 
-
 
NC_010501  PputW619_2628  phenylacetic acid degradation protein PaaD  50.72 
 
 
151 aa  150  7e-36  Pseudomonas putida W619  Bacteria  normal  0.45641  normal  0.0525731 
 
 
-
 
NC_007802  Jann_0657  phenylacetic acid degradation protein PaaD  53.68 
 
 
143 aa  148  2e-35  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0937  phenylacetic acid degradation protein PaaD  55.32 
 
 
149 aa  147  4e-35  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2615  phenylacetic acid degradation protein PaaD  52.24 
 
 
146 aa  146  7e-35  Pseudomonas putida GB-1  Bacteria  normal  0.518393  normal  0.199542 
 
 
-
 
NC_009832  Spro_3080  phenylacetic acid degradation protein PaaD  47.45 
 
 
146 aa  143  8.000000000000001e-34  Serratia proteamaculans 568  Bacteria  normal  normal  0.378312 
 
 
-
 
NC_002947  PP_3281  phenylacetic acid degradation protein PaaD  50 
 
 
146 aa  142  1e-33  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2478  phenylacetic acid degradation protein PaaD  50.75 
 
 
146 aa  142  2e-33  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0682  phenylacetic acid degradation protein PaaD  49.29 
 
 
158 aa  139  1.9999999999999998e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.977653 
 
 
-
 
NC_009956  Dshi_3825  phenylacetic acid degradation protein PaaD  52.21 
 
 
141 aa  138  3e-32  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.17422  normal  0.478257 
 
 
-
 
NC_007958  RPD_1830  phenylacetic acid degradation protein PaaD  50 
 
 
150 aa  137  4.999999999999999e-32  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.307923  normal 
 
 
-
 
CP001637  EcDH1_2249  phenylacetic acid degradation protein PaaD  46.97 
 
 
140 aa  136  1e-31  Escherichia coli DH1  Bacteria  normal  0.0320405  n/a   
 
 
-
 
NC_009801  EcE24377A_1581  phenylacetic acid degradation protein PaaD  46.97 
 
 
140 aa  136  1e-31  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1483  phenylacetic acid degradation protein PaaD  46.97 
 
 
140 aa  136  1e-31  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2259  phenylacetic acid degradation protein PaaD  46.97 
 
 
140 aa  136  1e-31  Escherichia coli ATCC 8739  Bacteria  normal  0.059519  normal 
 
 
-
 
NC_009654  Mmwyl1_3098  phenylacetic acid degradation protein PaaD  47.76 
 
 
154 aa  135  2e-31  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.000278086 
 
 
-
 
NC_009511  Swit_0751  phenylacetic acid degradation protein PaaD  48.23 
 
 
149 aa  135  2e-31  Sphingomonas wittichii RW1  Bacteria  normal  0.117185  normal  0.261303 
 
 
-
 
NC_008044  TM1040_0439  phenylacetic acid degradation protein PaaD  48.25 
 
 
143 aa  135  2e-31  Ruegeria sp. TM1040  Bacteria  normal  0.778856  normal 
 
 
-
 
NC_013124  Afer_1371  phenylacetic acid degradation protein PaaD  53.03 
 
 
145 aa  135  2e-31  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.154408  n/a   
 
 
-
 
NC_008709  Ping_0658  phenylacetic acid degradation protein PaaD  46.76 
 
 
146 aa  135  2e-31  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3635  phenylacetic acid degradation protein PaaD  50.72 
 
 
157 aa  133  9e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.182413  normal  0.29852 
 
 
-
 
NC_008786  Veis_3943  phenylacetic acid degradation protein PaaD  46.85 
 
 
152 aa  133  9e-31  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.545833 
 
 
-
 
NC_010524  Lcho_2404  phenylacetic acid degradation protein PaaD  48.91 
 
 
150 aa  132  1.9999999999999998e-30  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.671288 
 
 
-
 
NC_010002  Daci_0569  phenylacetic acid degradation protein PaaD  46.38 
 
 
155 aa  131  3e-30  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0985  phenylacetic acid degradation protein  47.89 
 
 
150 aa  130  3.9999999999999996e-30  Methylibium petroleiphilum PM1  Bacteria  normal  0.594777  normal 
 
 
-
 
NC_011894  Mnod_5525  phenylacetic acid degradation protein PaaD  51.77 
 
 
148 aa  130  6e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717257  n/a   
 
 
-
 
NC_011004  Rpal_1924  phenylacetic acid degradation protein PaaD  50 
 
 
157 aa  130  6.999999999999999e-30  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.082152  n/a   
 
 
-
 
NC_008578  Acel_1660  phenylacetic acid degradation protein PaaD  47.37 
 
 
164 aa  129  2.0000000000000002e-29  Acidothermus cellulolyticus 11B  Bacteria  normal  0.388826  normal  0.270829 
 
 
-
 
NC_013235  Namu_2481  phenylacetic acid degradation protein PaaD  46.1 
 
 
160 aa  124  4.0000000000000003e-28  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000323431  hitchhiker  0.00762361 
 
 
-
 
NC_009484  Acry_0478  phenylacetic acid degradation protein PaaD  50.38 
 
 
153 aa  123  1e-27  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_0902  phenylacetic acid degradation protein PaaD  45.83 
 
 
165 aa  120  7e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_2696  phenylacetic acid degradation protein PaaD  48.82 
 
 
160 aa  118  1.9999999999999998e-26  Salinispora arenicola CNS-205  Bacteria  normal  0.165626  hitchhiker  0.00035972 
 
 
-
 
NC_011894  Mnod_3366  phenylacetic acid degradation protein PaaD  45.45 
 
 
154 aa  114  3.9999999999999997e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.27764  n/a   
 
 
-
 
NC_014210  Ndas_2476  phenylacetic acid degradation protein PaaD  47.73 
 
 
135 aa  108  2.0000000000000002e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009717  Xaut_5041  phenylacetic acid degradation protein PaaD  45.32 
 
 
153 aa  109  2.0000000000000002e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3047  phenylacetic acid degradation protein PaaD  39.74 
 
 
156 aa  108  3e-23  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_4483  phenylacetic acid degradation protein PaaD  44.76 
 
 
143 aa  107  6e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.18352  normal 
 
 
-
 
NC_013501  Rmar_1553  thioesterase superfamily protein  45.9 
 
 
146 aa  106  1e-22  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_26560  phenylacetic acid degradation protein PaaD  43.8 
 
 
142 aa  103  1e-21  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.190774 
 
 
-
 
NC_012803  Mlut_20340  phenylacetic acid degradation protein PaaD  41.35 
 
 
138 aa  102  2e-21  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0402  phenylacetic acid degradation protein PaaD  43.48 
 
 
134 aa  98.2  3e-20  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.925599  decreased coverage  0.0065275 
 
 
-
 
NC_008541  Arth_3246  hypothetical protein  40.34 
 
 
172 aa  97.1  7e-20  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0223  thioesterase superfamily protein  36.07 
 
 
158 aa  94.7  4e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.103741 
 
 
-
 
NC_009943  Dole_0386  thioesterase superfamily protein  40.71 
 
 
130 aa  88.6  2e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2608  phenylacetic acid degradation-related protein  40.16 
 
 
148 aa  88.2  3e-17  Mycobacterium sp. MCS  Bacteria  normal  0.824711  n/a   
 
 
-
 
NC_008705  Mkms_2652  hypothetical protein  40.16 
 
 
148 aa  88.2  3e-17  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2638  hypothetical protein  40.16 
 
 
148 aa  88.2  3e-17  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1324  phenylacetic acid degradation protein PaaD  39.82 
 
 
124 aa  86.7  9e-17  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0859981 
 
 
-
 
NC_013169  Ksed_01900  hypothetical protein  42.74 
 
 
199 aa  86.7  1e-16  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_002936  DET0937  thioesterase family protein  37.39 
 
 
136 aa  85.1  3e-16  Dehalococcoides ethenogenes 195  Bacteria  normal  0.0346835  n/a   
 
 
-
 
NC_014212  Mesil_2320  phenylacetic acid degradation protein PaaD  42.11 
 
 
125 aa  84.7  4e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_05295  hypothetical protein  36.44 
 
 
136 aa  84.7  4e-16  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.702585  n/a   
 
 
-
 
NC_013552  DhcVS_808  thioesterase  36.94 
 
 
136 aa  82.8  0.000000000000001  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0821  thioesterase superfamily protein  37.27 
 
 
136 aa  82.8  0.000000000000001  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0467  thioesterase superfamily protein  40.5 
 
 
146 aa  81.3  0.000000000000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.492542  n/a   
 
 
-
 
NC_013216  Dtox_1384  thioesterase superfamily protein  32.79 
 
 
137 aa  78.6  0.00000000000003  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00487893 
 
 
-
 
NC_007796  Mhun_1848  phenylacetic acid degradation-related protein  36.13 
 
 
128 aa  77  0.00000000000007  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.651709 
 
 
-
 
CP001800  Ssol_0432  thioesterase superfamily protein  37.5 
 
 
121 aa  75.1  0.0000000000003  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_011769  DvMF_2152  thioesterase superfamily protein  38.76 
 
 
144 aa  74.7  0.0000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_010571  Oter_2154  thioesterase superfamily protein  36.36 
 
 
147 aa  74.3  0.0000000000005  Opitutus terrae PB90-1  Bacteria  normal  0.770141  normal  0.098751 
 
 
-
 
NC_007355  Mbar_A1645  phenylacetic acid degradation protein  35.34 
 
 
136 aa  73.6  0.0000000000009  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_009675  Anae109_3719  thioesterase superfamily protein  42.4 
 
 
133 aa  72.8  0.000000000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.670455 
 
 
-
 
NC_008554  Sfum_0232  hypothetical protein  36.59 
 
 
142 aa  72.4  0.000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000358883  normal  0.422713 
 
 
-
 
NC_013743  Htur_2890  thioesterase superfamily protein  40 
 
 
130 aa  72  0.000000000003  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007955  Mbur_1555  phenylacetic acid degradation-related protein  36.61 
 
 
135 aa  70.9  0.000000000006  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000594632  n/a   
 
 
-
 
NC_011883  Ddes_1737  thioesterase superfamily protein  38.53 
 
 
131 aa  68.9  0.00000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  unclonable  0.000000190297  n/a   
 
 
-
 
NC_008553  Mthe_0286  hypothetical protein  37.25 
 
 
132 aa  68.6  0.00000000003  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_009440  Msed_0273  thioesterase superfamily protein  36.89 
 
 
116 aa  66.2  0.0000000001  Metallosphaera sedula DSM 5348  Archaea  normal  0.0676249  normal  0.122372 
 
 
-
 
NC_010803  Clim_2248  thioesterase superfamily protein  30.95 
 
 
138 aa  65.5  0.0000000003  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_0009  thioesterase superfamily protein  36.21 
 
 
161 aa  65.1  0.0000000003  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.239362  n/a   
 
 
-
 
NC_008639  Cpha266_1470  hypothetical protein  32.46 
 
 
133 aa  64.7  0.0000000004  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.966701  n/a   
 
 
-
 
NC_009712  Mboo_1448  hypothetical protein  37.1 
 
 
155 aa  62.8  0.000000002  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.043674  normal  0.0181319 
 
 
-
 
NC_011898  Ccel_1701  thioesterase superfamily protein  31.9 
 
 
142 aa  60.8  0.000000006  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000000649367  n/a   
 
 
-
 
NC_008025  Dgeo_0297  phenylacetic acid degradation protein PaaD  36.11 
 
 
123 aa  59.3  0.00000002  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
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