| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0751 |
|---|
| Symbol | |
|---|
| ID | 5197923 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 832576 |
|---|
| End bp | 833025 |
|---|
| Gene Length | 450 bp |
|---|
| Protein Length | 149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640580295 |
|---|
| Product | phenylacetic acid degradation protein PaaD |
|---|
| Protein accession | YP_001261256 |
|---|
| Protein GI | 148553674 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.117185 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.261303 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG ACATCCTTGC CCGCCGCGTC GCCGAGCGGC TGCTCGAACT GGAGGGCACC
GCCCCGGTCT GGGGCATCGT GCTGGAGGAG GCGCGGGTCG GCTATGCGCG CCTCGCGATG
ACGATCCGGC CGGACATGAC CAACGGCCAT GGATCGATCC ATGGCGGCAT GATCTTCGCG
CTGGCCGACA CCGCCTTCGC CTATGCCTGC AACAGCCGCA ACGTCTCGAC CGTCGCGCAG
GGCGCATCCA TCCTGTTCCT GGCCCCCGCC CATCCGGGCG AGGAGCTGAT CGCCGAGGCG
ACCGAACAGG CCGTCGCCGG CCGCAGCGGC GCCTACAGCG TCGCGATCCG CACCCGCGAC
GGCCGTGCCA TCGCGCAATT CCAGGGCCAT AGCCGAGCGA TCGGCGGCCA GGTCATCGAA
GACGAACCCC AAGGAGACTC CCATGGCTGA
|
|---|
| Protein sequence | MTDDILARRV AERLLELEGT APVWGIVLEE ARVGYARLAM TIRPDMTNGH GSIHGGMIFA
LADTAFAYAC NSRNVSTVAQ GASILFLAPA HPGEELIAEA TEQAVAGRSG AYSVAIRTRD
GRAIAQFQGH SRAIGGQVIE DEPQGDSHG
|
|---|
| |