| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1830 |
|---|
| Symbol | |
|---|
| ID | 4022312 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2048383 |
|---|
| End bp | 2048835 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637962024 |
|---|
| Product | phenylacetic acid degradation protein PaaD |
|---|
| Protein accession | YP_568967 |
|---|
| Protein GI | 91976308 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.307923 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACCG ACCTCGCGCC CGACGAACTG GCGCGCGCCT GCGCAAACGC GATGTGGGCC
AACGACCACG CCAGCAAGGC GCTCGGCATG CAGATCGTCG AGATCGGCGA AGGCCATGCG
ACGCTTTCGA TGACCGTCAC CACCGAAATG GTCAACGGCC ACGGCATCGC GCATGGCGGC
TTCATCTTCA CGCTGGCGGA TTCCGCCTTC GCCTATGCCT GCAACTCGCG CAACGAGAAC
ACGGTGGCGG CGCAGGGCGC GATCAGCTTC ATCCGCCCGG GCAAGCTCGG CGCCAGACTG
GTGGCGAGCG CGCGCGAGGT CACCCGCGCC GGGCGCTCCG GCATCTACGA CGTCCGCGTC
ACCTCGGGCG GCGTGGTGAT CGCGGAATTC CGCGGCAATT CGCGCGCGAT CGGCGGGACG
CTGGTGCCGC CGCAAGACAC CGAACAACGC TGA
|
|---|
| Protein sequence | MTTDLAPDEL ARACANAMWA NDHASKALGM QIVEIGEGHA TLSMTVTTEM VNGHGIAHGG
FIFTLADSAF AYACNSRNEN TVAAQGAISF IRPGKLGARL VASAREVTRA GRSGIYDVRV
TSGGVVIAEF RGNSRAIGGT LVPPQDTEQR
|
|---|
| |