| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3116 |
|---|
| Symbol | |
|---|
| ID | 6288435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010682 |
|---|
| Strand | + |
|---|
| Start bp | 3265783 |
|---|
| End bp | 3266244 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642626692 |
|---|
| Product | phenylacetic acid degradation protein PaaD |
|---|
| Protein accession | YP_001900671 |
|---|
| Protein GI | 187930184 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00121794 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.101093 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGAAA CGACCCTCCA CGATGCGCAG GCGCTGGCTG AAGCGGCCTG CAAAAGCATG
TTCGACGCTG ATGCCTGCAC CCGCTGGCTC GGCATGCGCG TGGAGGCGGT CGCGCCCGGC
TATGCCCGGC TGTCGATGGC GGTGCGGCCT GAATTCCTCA ACGGGCATCG CACCTGTCAT
GGCGGATTGA TCTTCACGCT GGCCGATTCG GCTTTCGCGT TTGCCTGCAA CAGCCATAAC
CACAACACGG TGGCGGCTGG GTGCGGCGTC GACTTCCTGC GCCCGGCGCA CGGCGGCGAC
ACCCTCACAG CAGAGGCAAC CGAGCAGGTC TTGTCCGGCC GACACGGCAT CTACGACGTA
CGCGTGACAA ACCAGGCCGG CGAGGTGGTC GCCATGTTTC GCGGCAAATC TGCGCAGATT
CGCGGCCAGG TCATTCCGGT CCCTGGCAGC CCAGAACCCT AG
|
|---|
| Protein sequence | MTETTLHDAQ ALAEAACKSM FDADACTRWL GMRVEAVAPG YARLSMAVRP EFLNGHRTCH
GGLIFTLADS AFAFACNSHN HNTVAAGCGV DFLRPAHGGD TLTAEATEQV LSGRHGIYDV
RVTNQAGEVV AMFRGKSAQI RGQVIPVPGS PEP
|
|---|
| |