Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3116 |
Symbol | |
ID | 6288435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010682 |
Strand | + |
Start bp | 3265783 |
End bp | 3266244 |
Gene Length | 462 bp |
Protein Length | 153 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642626692 |
Product | phenylacetic acid degradation protein PaaD |
Protein accession | YP_001900671 |
Protein GI | 187930184 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
TIGRFAM ID | [TIGR00369] uncharacterized domain 1 [TIGR02286] phenylacetic acid degradation protein PaaD |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00121794 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.101093 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGGAAA CGACCCTCCA CGATGCGCAG GCGCTGGCTG AAGCGGCCTG CAAAAGCATG TTCGACGCTG ATGCCTGCAC CCGCTGGCTC GGCATGCGCG TGGAGGCGGT CGCGCCCGGC TATGCCCGGC TGTCGATGGC GGTGCGGCCT GAATTCCTCA ACGGGCATCG CACCTGTCAT GGCGGATTGA TCTTCACGCT GGCCGATTCG GCTTTCGCGT TTGCCTGCAA CAGCCATAAC CACAACACGG TGGCGGCTGG GTGCGGCGTC GACTTCCTGC GCCCGGCGCA CGGCGGCGAC ACCCTCACAG CAGAGGCAAC CGAGCAGGTC TTGTCCGGCC GACACGGCAT CTACGACGTA CGCGTGACAA ACCAGGCCGG CGAGGTGGTC GCCATGTTTC GCGGCAAATC TGCGCAGATT CGCGGCCAGG TCATTCCGGT CCCTGGCAGC CCAGAACCCT AG
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Protein sequence | MTETTLHDAQ ALAEAACKSM FDADACTRWL GMRVEAVAPG YARLSMAVRP EFLNGHRTCH GGLIFTLADS AFAFACNSHN HNTVAAGCGV DFLRPAHGGD TLTAEATEQV LSGRHGIYDV RVTNQAGEVV AMFRGKSAQI RGQVIPVPGS PEP
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