206 homologs were found in PanDaTox collection
for query gene Pput_2478 on replicon NC_009512
Organism: Pseudomonas putida F1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009512  Pput_2478  phenylacetic acid degradation protein PaaD  100 
 
 
146 aa  298  1e-80  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3281  phenylacetic acid degradation protein PaaD  98.63 
 
 
146 aa  294  2e-79  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2615  phenylacetic acid degradation protein PaaD  97.26 
 
 
146 aa  290  4e-78  Pseudomonas putida GB-1  Bacteria  normal  0.518393  normal  0.199542 
 
 
-
 
NC_010501  PputW619_2628  phenylacetic acid degradation protein PaaD  77.24 
 
 
151 aa  240  5e-63  Pseudomonas putida W619  Bacteria  normal  0.45641  normal  0.0525731 
 
 
-
 
NC_009654  Mmwyl1_3098  phenylacetic acid degradation protein PaaD  61.7 
 
 
154 aa  191  3e-48  Marinomonas sp. MWYL1  Bacteria  normal  hitchhiker  0.000278086 
 
 
-
 
NC_012791  Vapar_1237  phenylacetic acid degradation protein PaaD  56.3 
 
 
147 aa  164  2.9999999999999998e-40  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2692  phenylacetic acid degradation protein PaaD  54.68 
 
 
153 aa  163  8e-40  Burkholderia phymatum STM815  Bacteria  normal  0.250107  normal 
 
 
-
 
NC_007434  BURPS1710b_3567  phenylacetic acid degradation protein PaaI  55.22 
 
 
251 aa  159  2e-38  Burkholderia pseudomallei 1710b  Bacteria  normal  0.060136  n/a   
 
 
-
 
NC_007964  Nham_0937  phenylacetic acid degradation protein PaaD  55.63 
 
 
149 aa  158  3e-38  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4800  phenylacetic acid degradation protein PaaD  55.24 
 
 
154 aa  158  3e-38  Paracoccus denitrificans PD1222  Bacteria  normal  0.283675  normal  0.204675 
 
 
-
 
NC_009074  BURPS668_3549  phenylacetic acid degradation protein PaaD  55.22 
 
 
158 aa  157  3e-38  Burkholderia pseudomallei 668  Bacteria  normal  0.0916225  n/a   
 
 
-
 
NC_009076  BURPS1106A_3576  phenylacetic acid degradation protein PaaD  55.22 
 
 
158 aa  157  3e-38  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2903  phenylacetic acid degradation protein PaaD  55.22 
 
 
154 aa  157  5e-38  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.00325077  n/a   
 
 
-
 
NC_010681  Bphyt_3489  phenylacetic acid degradation protein PaaD  53.24 
 
 
153 aa  156  8e-38  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00562362  hitchhiker  0.000228083 
 
 
-
 
NC_007298  Daro_0373  phenylacetic acid degradation-related protein:phenylacetic acid degradation protein PaaD  53.33 
 
 
156 aa  156  1e-37  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.000000506078  hitchhiker  0.00000423415 
 
 
-
 
NC_010084  Bmul_2854  phenylacetic acid degradation protein PaaD  53.28 
 
 
152 aa  155  1e-37  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0283833  normal  0.621321 
 
 
-
 
NC_007951  Bxe_A0467  phenylacetic acid degradation- related thioesterase (PaaI)  52.52 
 
 
153 aa  154  4e-37  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0470  phenylacetic acid degradation protein PaaD  52.55 
 
 
150 aa  154  5.0000000000000005e-37  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0904963  normal 
 
 
-
 
NC_007510  Bcep18194_A3627  phenylacetic acid degradation protein PaaD  52.55 
 
 
150 aa  153  6e-37  Burkholderia sp. 383  Bacteria  normal  0.0218071  normal 
 
 
-
 
NC_008390  Bamb_0445  phenylacetic acid degradation protein PaaD  52.55 
 
 
150 aa  153  9e-37  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0569  phenylacetic acid degradation protein PaaD  53.44 
 
 
155 aa  151  2.9999999999999998e-36  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0985  phenylacetic acid degradation protein  54.96 
 
 
150 aa  150  8e-36  Methylibium petroleiphilum PM1  Bacteria  normal  0.594777  normal 
 
 
-
 
NC_009485  BBta_2871  phenylacetic acid degradation protein  50.71 
 
 
152 aa  149  1e-35  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.165217  normal  0.133325 
 
 
-
 
NC_010682  Rpic_3116  phenylacetic acid degradation protein PaaD  51.77 
 
 
153 aa  148  3e-35  Ralstonia pickettii 12J  Bacteria  hitchhiker  0.00121794  normal  0.101093 
 
 
-
 
NC_012856  Rpic12D_2751  phenylacetic acid degradation protein PaaD  52.24 
 
 
153 aa  146  9e-35  Ralstonia pickettii 12D  Bacteria  hitchhiker  0.00224854  normal 
 
 
-
 
NC_008060  Bcen_2565  phenylacetic acid degradation protein PaaD  50.36 
 
 
150 aa  146  1.0000000000000001e-34  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0540  phenylacetic acid degradation protein PaaD  50.36 
 
 
150 aa  146  1.0000000000000001e-34  Burkholderia cenocepacia HI2424  Bacteria  normal  0.460721  n/a   
 
 
-
 
NC_003295  RSc2874  phenylacetic acid degradation protein  52.99 
 
 
155 aa  145  2.0000000000000003e-34  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.00122895  normal 
 
 
-
 
NC_010524  Lcho_2404  phenylacetic acid degradation protein PaaD  52.21 
 
 
150 aa  145  2.0000000000000003e-34  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.671288 
 
 
-
 
NC_011662  Tmz1t_1510  phenylacetic acid degradation protein PaaD  48.89 
 
 
155 aa  145  2.0000000000000003e-34  Thauera sp. MZ1T  Bacteria  normal  0.269892  n/a   
 
 
-
 
NC_010508  Bcenmc03_0512  phenylacetic acid degradation protein PaaD  50.36 
 
 
150 aa  145  2.0000000000000003e-34  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.245476  normal  0.787837 
 
 
-
 
NC_013235  Namu_2481  phenylacetic acid degradation protein PaaD  59.23 
 
 
160 aa  144  5e-34  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000323431  hitchhiker  0.00762361 
 
 
-
 
NC_011894  Mnod_5525  phenylacetic acid degradation protein PaaD  59.35 
 
 
148 aa  143  6e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.717257  n/a   
 
 
-
 
NC_007347  Reut_A3016  phenylacetic acid degradation-related protein:phenylacetic acid degradation protein PaaD  50 
 
 
178 aa  138  1.9999999999999998e-32  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0682  phenylacetic acid degradation protein PaaD  52.9 
 
 
158 aa  138  1.9999999999999998e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.977653 
 
 
-
 
NC_008709  Ping_0658  phenylacetic acid degradation protein PaaD  47.52 
 
 
146 aa  138  1.9999999999999998e-32  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1660  phenylacetic acid degradation protein PaaD  53.54 
 
 
164 aa  138  3e-32  Acidothermus cellulolyticus 11B  Bacteria  normal  0.388826  normal  0.270829 
 
 
-
 
NC_008786  Veis_3943  phenylacetic acid degradation protein PaaD  53.96 
 
 
152 aa  137  3.9999999999999997e-32  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.545833 
 
 
-
 
NC_007778  RPB_3635  phenylacetic acid degradation protein PaaD  45.77 
 
 
157 aa  136  7.999999999999999e-32  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.182413  normal  0.29852 
 
 
-
 
NC_011894  Mnod_3366  phenylacetic acid degradation protein PaaD  52.21 
 
 
154 aa  136  1e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.27764  n/a   
 
 
-
 
NC_007973  Rmet_3164  phenylacetic acid degradation protein PaaD  50 
 
 
146 aa  134  3.0000000000000003e-31  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.000726933  normal 
 
 
-
 
NC_009720  Xaut_0902  phenylacetic acid degradation protein PaaD  48.23 
 
 
165 aa  134  3.0000000000000003e-31  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1830  phenylacetic acid degradation protein PaaD  45.07 
 
 
150 aa  132  1.9999999999999998e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.307923  normal 
 
 
-
 
NC_011004  Rpal_1924  phenylacetic acid degradation protein PaaD  46.1 
 
 
157 aa  132  1.9999999999999998e-30  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.082152  n/a   
 
 
-
 
NC_006349  BMAA0539.1  hypothetical protein  56.48 
 
 
159 aa  131  3e-30  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0622463  n/a   
 
 
-
 
NC_008835  BMA10229_0934  hypothetical protein  57 
 
 
104 aa  127  7.000000000000001e-29  Burkholderia mallei NCTC 10229  Bacteria  normal  0.431465  n/a   
 
 
-
 
NC_009956  Dshi_3825  phenylacetic acid degradation protein PaaD  47.52 
 
 
141 aa  126  9.000000000000001e-29  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.17422  normal  0.478257 
 
 
-
 
NC_007802  Jann_0657  phenylacetic acid degradation protein PaaD  46.48 
 
 
143 aa  126  1.0000000000000001e-28  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008784  BMASAVP1_0637  hypothetical protein  56 
 
 
104 aa  125  2.0000000000000002e-28  Burkholderia mallei SAVP1  Bacteria  normal  0.0764989  n/a   
 
 
-
 
NC_009484  Acry_0478  phenylacetic acid degradation protein PaaD  48.89 
 
 
153 aa  124  4.0000000000000003e-28  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2249  phenylacetic acid degradation protein PaaD  46.56 
 
 
140 aa  124  6e-28  Escherichia coli DH1  Bacteria  normal  0.0320405  n/a   
 
 
-
 
NC_009801  EcE24377A_1581  phenylacetic acid degradation protein PaaD  46.56 
 
 
140 aa  124  6e-28  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1483  phenylacetic acid degradation protein PaaD  46.56 
 
 
140 aa  124  6e-28  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2259  phenylacetic acid degradation protein PaaD  46.56 
 
 
140 aa  124  6e-28  Escherichia coli ATCC 8739  Bacteria  normal  0.059519  normal 
 
 
-
 
NC_008044  TM1040_0439  phenylacetic acid degradation protein PaaD  44.68 
 
 
143 aa  123  8.000000000000001e-28  Ruegeria sp. TM1040  Bacteria  normal  0.778856  normal 
 
 
-
 
NC_013124  Afer_1371  phenylacetic acid degradation protein PaaD  47.33 
 
 
145 aa  122  1e-27  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.154408  n/a   
 
 
-
 
NC_009832  Spro_3080  phenylacetic acid degradation protein PaaD  47.92 
 
 
146 aa  122  1e-27  Serratia proteamaculans 568  Bacteria  normal  normal  0.378312 
 
 
-
 
NC_009953  Sare_2696  phenylacetic acid degradation protein PaaD  47.97 
 
 
160 aa  111  4.0000000000000004e-24  Salinispora arenicola CNS-205  Bacteria  normal  0.165626  hitchhiker  0.00035972 
 
 
-
 
NC_009511  Swit_0751  phenylacetic acid degradation protein PaaD  43.06 
 
 
149 aa  110  8.000000000000001e-24  Sphingomonas wittichii RW1  Bacteria  normal  0.117185  normal  0.261303 
 
 
-
 
NC_013501  Rmar_1553  thioesterase superfamily protein  43.41 
 
 
146 aa  106  1e-22  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4483  phenylacetic acid degradation protein PaaD  51.46 
 
 
143 aa  103  7e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.18352  normal 
 
 
-
 
NC_007644  Moth_0402  phenylacetic acid degradation protein PaaD  42.86 
 
 
134 aa  99  2e-20  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.925599  decreased coverage  0.0065275 
 
 
-
 
NC_013159  Svir_26560  phenylacetic acid degradation protein PaaD  45.16 
 
 
142 aa  99.4  2e-20  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.190774 
 
 
-
 
NC_011886  Achl_3047  phenylacetic acid degradation protein PaaD  38.31 
 
 
156 aa  98.6  3e-20  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014210  Ndas_2476  phenylacetic acid degradation protein PaaD  47.5 
 
 
135 aa  95.9  1e-19  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009717  Xaut_5041  phenylacetic acid degradation protein PaaD  43.44 
 
 
153 aa  94.7  3e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0223  thioesterase superfamily protein  36.15 
 
 
158 aa  94.7  4e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.103741 
 
 
-
 
NC_013216  Dtox_1384  thioesterase superfamily protein  31.82 
 
 
137 aa  90.1  9e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00487893 
 
 
-
 
NC_008541  Arth_3246  hypothetical protein  40.98 
 
 
172 aa  89.7  1e-17  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_1848  phenylacetic acid degradation-related protein  38.14 
 
 
128 aa  86.3  1e-16  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.651709 
 
 
-
 
NC_014212  Mesil_2320  phenylacetic acid degradation protein PaaD  40.83 
 
 
125 aa  86.3  1e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2608  phenylacetic acid degradation-related protein  46.02 
 
 
148 aa  85.5  2e-16  Mycobacterium sp. MCS  Bacteria  normal  0.824711  n/a   
 
 
-
 
NC_008705  Mkms_2652  hypothetical protein  46.02 
 
 
148 aa  85.5  2e-16  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_0232  hypothetical protein  39.83 
 
 
142 aa  85.1  3e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000358883  normal  0.422713 
 
 
-
 
NC_009077  Mjls_2638  hypothetical protein  46.02 
 
 
148 aa  85.1  3e-16  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_21410  phenylacetic acid degradation protein PaaD  40.32 
 
 
146 aa  84.7  4e-16  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1324  phenylacetic acid degradation protein PaaD  39.66 
 
 
124 aa  83.2  0.000000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.0859981 
 
 
-
 
NC_008553  Mthe_0286  hypothetical protein  37.39 
 
 
132 aa  81.3  0.000000000000004  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_010571  Oter_2154  thioesterase superfamily protein  38.1 
 
 
147 aa  80.1  0.000000000000009  Opitutus terrae PB90-1  Bacteria  normal  0.770141  normal  0.098751 
 
 
-
 
NC_013169  Ksed_01900  hypothetical protein  41.12 
 
 
199 aa  80.1  0.00000000000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_2152  thioesterase superfamily protein  39.66 
 
 
144 aa  78.2  0.00000000000004  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_002936  DET0937  thioesterase family protein  36.11 
 
 
136 aa  77.4  0.00000000000006  Dehalococcoides ethenogenes 195  Bacteria  normal  0.0346835  n/a   
 
 
-
 
NC_013743  Htur_2890  thioesterase superfamily protein  41.38 
 
 
130 aa  77.4  0.00000000000006  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007355  Mbar_A1645  phenylacetic acid degradation protein  36.94 
 
 
136 aa  76.3  0.0000000000001  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_013552  DhcVS_808  thioesterase  34.26 
 
 
136 aa  75.1  0.0000000000003  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_05295  hypothetical protein  31.75 
 
 
136 aa  74.7  0.0000000000003  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.702585  n/a   
 
 
-
 
NC_009455  DehaBAV1_0821  thioesterase superfamily protein  33.33 
 
 
136 aa  74.3  0.0000000000005  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0386  thioesterase superfamily protein  35.04 
 
 
130 aa  73.2  0.000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1470  hypothetical protein  35.29 
 
 
133 aa  72  0.000000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.966701  n/a   
 
 
-
 
NC_012803  Mlut_20340  phenylacetic acid degradation protein PaaD  34.4 
 
 
138 aa  71.6  0.000000000003  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_2248  thioesterase superfamily protein  34.38 
 
 
138 aa  69.3  0.00000000002  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1977  thioesterase superfamily protein  29.55 
 
 
140 aa  68.9  0.00000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
CP001800  Ssol_0432  thioesterase superfamily protein  35.51 
 
 
121 aa  68.2  0.00000000004  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_007955  Mbur_1555  phenylacetic acid degradation-related protein  31.4 
 
 
135 aa  66.6  0.0000000001  Methanococcoides burtonii DSM 6242  Archaea  hitchhiker  0.000000594632  n/a   
 
 
-
 
NC_013757  Gobs_0467  thioesterase superfamily protein  34.65 
 
 
146 aa  66.2  0.0000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.492542  n/a   
 
 
-
 
NC_008025  Dgeo_0297  phenylacetic acid degradation protein PaaD  40.17 
 
 
123 aa  63.2  0.000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009440  Msed_0273  thioesterase superfamily protein  33.03 
 
 
116 aa  60.8  0.000000006  Metallosphaera sedula DSM 5348  Archaea  normal  0.0676249  normal  0.122372 
 
 
-
 
NC_009675  Anae109_3719  thioesterase superfamily protein  40.18 
 
 
133 aa  60.5  0.000000008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.670455 
 
 
-
 
NC_009485  BBta_3890  hypothetical protein  36.45 
 
 
133 aa  59.7  0.00000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.483397 
 
 
-
 
NC_009943  Dole_1498  thioesterase superfamily protein  35 
 
 
149 aa  60.1  0.00000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
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