Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_26560 |
Symbol | |
ID | 8387980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 2863971 |
End bp | 2864399 |
Gene Length | 429 bp |
Protein Length | 142 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644976694 |
Product | phenylacetic acid degradation protein PaaD |
Protein accession | YP_003134471 |
Protein GI | 257056639 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
TIGRFAM ID | [TIGR00369] uncharacterized domain 1 [TIGR02286] phenylacetic acid degradation protein PaaD |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.190774 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCACACT CCGATCCCGA CATCGCGGAG GCGACGCGGA CCATGCTCGA CGCCGATACC GCCTCGGCCT CCCTCGGCAT CGACGTCGTG AAAGCCCGGG ACGGACACGC GGTCGCACGG ATGCGCGTGA CCGAACGGAT GGTGAACGGA CACGGCATCG CCCACGGCGG ATTCCTGTTC CTGCTGGCGG ACACGACCTT CGCCTGCGCC TGCAACAGCC ACGGACCGGT GACGGTGGCC GCCGGGGCCG AGATCTCCTT CATCACCAGC GCCCGACTCG GCGACGAGCT GGTCGCCACG GCCTCCGAGC GCACCCGCTA CGGCCGCAAC GGCATCTACG ACGTCACCGT GCACCGCGAA ACCCCCACAG GCCGGGAGGT CATCGCGGAA TTCCGGGGAC GCAGCCGCAC CGTCGGACAA GTTCAATAA
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Protein sequence | MSHSDPDIAE ATRTMLDADT ASASLGIDVV KARDGHAVAR MRVTERMVNG HGIAHGGFLF LLADTTFACA CNSHGPVTVA AGAEISFITS ARLGDELVAT ASERTRYGRN GIYDVTVHRE TPTGREVIAE FRGRSRTVGQ VQ
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