Gene RSc2874 details

Gene Information

• Locus tag: RSc2874
• Symbol: paaI
• ID: 1221727
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 3103277
• End bp: 3103744
• Gene Length: 468 bp
• Protein Length: 155 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 637239281
• Product: phenylacetic acid degradation protein
• Protein accession: NP_520995
• Protein GI: 17547593
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism
• TIGRFAM ID: [TIGR00369] uncharacterized domain 1; [TIGR02286] phenylacetic acid degradation protein PaaD

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.00122895
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 21
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCGTGG CCGAAACCGC CTTCCCCGAC GCGCAGGCGC TGGCCGAAGC CGCCTGCCGA 
AGCATGCTCG ACGCCGATGC CTGCTCCCGC TGGCTCGGCA TGCGCGTGGA AGCGGTCGGC 
CCCGGCTACG CGCGCCTGGC CATGGCGGTG CGGCCCGAAT TCCTCAACGG GCACCGCACC 
TGCCATGGCG GGCTGATTTT CACGCTGGCC GATTCGGCCT TCGCGTTTGC CTGCAACAGC 
CACAACCACA ACACGGTCGC GGCGGGCTGC AGCGTCGAAT TCCTGCGGCC GGCGCACGAC 
GGCGACGTGC TGACTGCCGC AGCCGAGGAG CAAACCCTGT CCGGCCGCCA CGGGATCTAC 
GACGTGCGCG TGACCAACCA GGCCGGCGAC GTGGTCGCCA TGTTCCGGGG GAAATCGGCG 
CAGATCCGAG GCCACGTCAT CCCCGTTCCG GACAGCGGCG ACCGCTGA 

 

Protein sequence

MTVAETAFPD AQALAEAACR SMLDADACSR WLGMRVEAVG PGYARLAMAV RPEFLNGHRT 
CHGGLIFTLA DSAFAFACNS HNHNTVAAGC SVEFLRPAHD GDVLTAAAEE QTLSGRHGIY 
DVRVTNQAGD VVAMFRGKSA QIRGHVIPVP DSGDR