| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4483 |
|---|
| Symbol | |
|---|
| ID | 8335837 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5110361 |
|---|
| End bp | 5110792 |
|---|
| Gene Length | 432 bp |
|---|
| Protein Length | 143 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644957585 |
|---|
| Product | phenylacetic acid degradation protein PaaD |
|---|
| Protein accession | YP_003115187 |
|---|
| Protein GI | 256393623 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.18352 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGATG CCGACAAGGC GTCTGCGGGG CTGGGGATCG AGTTGGTCGA GGTGGCGCCG
GGGCGGGCTG TGGCTCGGAT GCGGGTCGGT GCGGCGATGC TGAATGGGCA CGGTATCGGG
CACGGGGGTT ATGTGTTCCT GCTTGCCGAT ACTGCTTTTG CGCTGGCTTG CAACAGTCGT
GGGCCGGTGA CGGTTGCCGC CGGGGCGGAT GTGAGCTTTC TGGCGGCGGT GGCTGAGGGG
GATGTGTTGA CGGCGCGGGC TGTGGAGCGG GTGGTGTTCG GGCGGAGTGG GATCTATGAC
GTGACGGTGA CGCGCGGGGG TGCGGGCGGC GGGGTGGGTG GCGGTGCTGA TCGCGAGGCT
GACGTCGTGG GGGATGGCGA GCAGGTCGTT GCGGAGTTCC GTGGGCGAAG TCGTGTCGTC
ACTGGTCGTT GA
|
|---|
| Protein sequence | MFDADKASAG LGIELVEVAP GRAVARMRVG AAMLNGHGIG HGGYVFLLAD TAFALACNSR
GPVTVAAGAD VSFLAAVAEG DVLTARAVER VVFGRSGIYD VTVTRGGAGG GVGGGADREA
DVVGDGEQVV AEFRGRSRVV TGR
|
|---|
| |