| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_1237 |
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| Symbol | |
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| ID | 7973161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 1351160 |
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| End bp | 1351603 |
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| Gene Length | 444 bp |
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| Protein Length | 147 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644791834 |
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| Product | phenylacetic acid degradation protein PaaD |
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| Protein accession | YP_002943154 |
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| Protein GI | 239814244 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
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| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCGACA CCACCCGCAC CCCCCAGCAA ACCGCCGAGT ACGTCCGCGA CGGCATGTTC
GCGAACGACA ACGCCTCCAA GGGCCTCGGC ATGCGCATCG TCGAGGTCGG CCCTGGCCAG
GCCACCCTCG AGATGCGCGT GCGCACCGAC ATGCTCAATG GCCACGCCAT CTGCCACGGC
GGCTTCATGG CCACGCTGGC TGATTCCACC TTTGCCTTCG CCTGCAACTC GTACAACGAG
CTCACGGTGG CCTCGGGCTT CTCGATCGAC TTCATCGCAC CGGCACGCGA AGGCGACGTG
CTCACCGCAC GCTGCTTCGA AGTGTCGAAG GCCGGCCGCA CCGGCGTGTA CGACACCGAG
ATCACCAACC AGCGCGGCGA GCGCGTCGCC ATGTTCCGCG GCCGTTCCTA CACCGCCAAG
GGCCGCCCCG CCGTTGCCGC CTGA
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| Protein sequence | MTDTTRTPQQ TAEYVRDGMF ANDNASKGLG MRIVEVGPGQ ATLEMRVRTD MLNGHAICHG
GFMATLADST FAFACNSYNE LTVASGFSID FIAPAREGDV LTARCFEVSK AGRTGVYDTE
ITNQRGERVA MFRGRSYTAK GRPAVAA
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