| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3825 |
|---|
| Symbol | |
|---|
| ID | 5714354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009956 |
|---|
| Strand | - |
|---|
| Start bp | 31792 |
|---|
| End bp | 32217 |
|---|
| Gene Length | 426 bp |
|---|
| Protein Length | 141 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641276740 |
|---|
| Product | phenylacetic acid degradation protein PaaD |
|---|
| Protein accession | YP_001542036 |
|---|
| Protein GI | 159046365 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.17422 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 0.478257 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACACCGC AGGAGCGCGC CCGCCGCGCC GCGGAGGCCA TGTGGTCCTC GGACCAGGCC
TCCAGATGGC TGGGCATGCG GCTCGTGTCG GTCGATGTGG GGACCGCAAC CCTGACCCTG
GAGGTGGCCG CCCACCATTG CAACGGGCAC GGGATCTGCC ATGGCGGCAT CACCTTTGCC
CTGGCCGACA GCGCCTTCGC CTTTGCCTGC AACAGCCGCA ACCAGGCGAC GGTCGCCCAG
CACAATGCGA TCACCTACAT CGCCCCCGCC CAACTGGGCG ACACCCTGAC GGCCACGGCG
CGGGAGCTTT CGCTGACCGG GCGCAGCGGC ATCTACGACA TACGCGTCGC GGATCAGGAC
GACCGGACCG TCGCCGAGAT GCGCGGCCTG TCCCGCGCGA TCAAGGGGCG GCTGTTCGAG
GAATGA
|
|---|
| Protein sequence | MTPQERARRA AEAMWSSDQA SRWLGMRLVS VDVGTATLTL EVAAHHCNGH GICHGGITFA
LADSAFAFAC NSRNQATVAQ HNAITYIAPA QLGDTLTATA RELSLTGRSG IYDIRVADQD
DRTVAEMRGL SRAIKGRLFE E
|
|---|
| |