| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0682 |
|---|
| Symbol | |
|---|
| ID | 3970582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 744482 |
|---|
| End bp | 744958 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637923798 |
|---|
| Product | phenylacetic acid degradation protein PaaD |
|---|
| Protein accession | YP_530573 |
|---|
| Protein GI | 90422203 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1
[TIGR02286] phenylacetic acid degradation protein PaaD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.977653 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGCAC GCAAAGAATC CATCGACCGG CTCGATCCGC AGGTGCTCGC GGAAGCCTGC
GCCGACGCCA TGCAGCGCGA CGACCGCGCC ACCAAGACGC TCGGCATCGC GGTGGTGCGC
GTCGGCCCCG GCGAGGCGGT GCTGACCATG ACGGTGCGCG ACGAGATGGC CAACGGCCAC
GGCATCTGCC ACGGCGGCTT CATCTTCACG CTGGCGGATT CCGCCTTCGC CTATGCGTGC
AACAGCTATG GCCAGCGCAC CGTGGCGCAG CAATGCGCGG TGACGTTCCT GCAGCCGGTG
CGTGTTGGTG CGCGGCTGGT CGCTCACGCC TTCGAGCGCT CCAAGGCGGG GCGCGGCGGC
ATCTACGACG TCACGGTGCG GGACGCCGAC AACGTCGCAG TCGCCGAGTT TCGCGGCCAT
TCGCGCACCG TCGCCGGCGA CCTGTTGGCG CCCGACACCG ACACCCCGCA ACAGTGA
|
|---|
| Protein sequence | MHARKESIDR LDPQVLAEAC ADAMQRDDRA TKTLGIAVVR VGPGEAVLTM TVRDEMANGH
GICHGGFIFT LADSAFAYAC NSYGQRTVAQ QCAVTFLQPV RVGARLVAHA FERSKAGRGG
IYDVTVRDAD NVAVAEFRGH SRTVAGDLLA PDTDTPQQ
|
|---|
| |