More than 300 homologs were found in PanDaTox collection
for query gene RSc1950 on replicon NC_003295
Organism: Ralstonia solanacearum GMI1000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003295  RSc1950  methyl-accepting chemotaxis transducer transmembrane protein  100 
 
 
329 aa  648    Ralstonia solanacearum GMI1000  Bacteria  normal  0.265012  normal  0.886741 
 
 
-
 
NC_012856  Rpic12D_1771  methyl-accepting chemotaxis sensory transducer  79.62 
 
 
520 aa  479  1e-134  Ralstonia pickettii 12D  Bacteria  normal  normal  0.841752 
 
 
-
 
NC_010682  Rpic_2095  methyl-accepting chemotaxis sensory transducer  79.94 
 
 
520 aa  479  1e-134  Ralstonia pickettii 12J  Bacteria  normal  0.649492  normal  0.265934 
 
 
-
 
NC_010681  Bphyt_0409  methyl-accepting chemotaxis sensory transducer  71.02 
 
 
585 aa  417  9.999999999999999e-116  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4301  methyl-accepting chemotaxis sensory transducer  69.75 
 
 
587 aa  408  1e-113  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5306  methyl-accepting chemotaxis sensory transducer  62.54 
 
 
565 aa  375  1e-103  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00488588  normal  0.0415564 
 
 
-
 
NC_010086  Bmul_4184  methyl-accepting chemotaxis sensory transducer  64.76 
 
 
493 aa  372  1e-102  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4332  methyl-accepting chemotaxis sensory transducer  64.97 
 
 
545 aa  369  1e-101  Burkholderia ambifaria MC40-6  Bacteria  normal  0.167851  normal 
 
 
-
 
NC_007511  Bcep18194_B1523  methyl-accepting chemotaxis sensory transducer  63.38 
 
 
539 aa  362  5.0000000000000005e-99  Burkholderia sp. 383  Bacteria  normal  normal  0.377846 
 
 
-
 
NC_007348  Reut_B5868  methyl-accepting chemotaxis sensory transducer  63.14 
 
 
541 aa  343  2.9999999999999997e-93  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3926  methyl-accepting chemotaxis sensory transducer  62.42 
 
 
539 aa  340  1e-92  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.279293  n/a   
 
 
-
 
NC_008543  Bcen2424_4440  methyl-accepting chemotaxis sensory transducer  62.42 
 
 
539 aa  340  1e-92  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5865  methyl-accepting chemotaxis sensory transducer  62.42 
 
 
539 aa  341  1e-92  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.439663  normal 
 
 
-
 
NC_010676  Bphyt_6645  methyl-accepting chemotaxis sensory transducer  59.38 
 
 
583 aa  331  9e-90  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.983597 
 
 
-
 
NC_007651  BTH_I2374  methyl-accepting chemotaxis protein  59.25 
 
 
586 aa  318  7.999999999999999e-86  Burkholderia thailandensis E264  Bacteria  normal  0.205822  n/a   
 
 
-
 
NC_007434  BURPS1710b_2139  methyl-accepting chemotaxis protein  57.86 
 
 
616 aa  317  1e-85  Burkholderia pseudomallei 1710b  Bacteria  normal  0.942679  n/a   
 
 
-
 
NC_009076  BURPS1106A_2002  methyl-accepting chemotaxis protein  57.86 
 
 
580 aa  317  2e-85  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1130  methyl-accepting chemotaxis protein  57.86 
 
 
580 aa  317  2e-85  Burkholderia mallei ATCC 23344  Bacteria  normal  0.306094  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1571  methyl-accepting chemotaxis protein  57.86 
 
 
580 aa  317  2e-85  Burkholderia mallei SAVP1  Bacteria  normal  0.295886  n/a   
 
 
-
 
NC_009080  BMA10247_0927  methyl-accepting chemotaxis protein  57.86 
 
 
580 aa  317  2e-85  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0232  methyl-accepting chemotaxis protein  57.86 
 
 
580 aa  317  2e-85  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1983  methyl-accepting chemotaxis protein  57.86 
 
 
580 aa  309  4e-83  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0742  methyl-accepting chemotaxis sensory transducer  52.7 
 
 
581 aa  299  5e-80  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  58.3 
 
 
559 aa  296  2e-79  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_008062  Bcen_6464  methyl-accepting chemotaxis sensory transducer  55.03 
 
 
528 aa  296  3e-79  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6699  methyl-accepting chemotaxis sensory transducer  55.03 
 
 
528 aa  296  3e-79  Burkholderia cenocepacia HI2424  Bacteria  normal  0.971949  normal  0.6752 
 
 
-
 
NC_010512  Bcenmc03_6305  methyl-accepting chemotaxis sensory transducer  54.72 
 
 
528 aa  295  6e-79  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  56.15 
 
 
525 aa  294  2e-78  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  55.52 
 
 
520 aa  290  2e-77  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_008752  Aave_2284  methyl-accepting chemotaxis sensory transducer  51.88 
 
 
547 aa  290  3e-77  Acidovorax citrulli AAC00-1  Bacteria  normal  0.206976  hitchhiker  0.0000952985 
 
 
-
 
NC_007336  Reut_C6240  chemotaxis sensory transducer  54.34 
 
 
556 aa  283  3.0000000000000004e-75  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008826  Mpe_B0133  methyl-accepting chemotaxis protein  53.57 
 
 
526 aa  283  3.0000000000000004e-75  Methylibium petroleiphilum PM1  Bacteria  normal  0.845076  hitchhiker  0.000223015 
 
 
-
 
NC_010002  Daci_5852  methyl-accepting chemotaxis sensory transducer  51.57 
 
 
618 aa  280  2e-74  Delftia acidovorans SPH-1  Bacteria  normal  0.217953  normal 
 
 
-
 
NC_003295  RSc1894  methyl-accepting chemotaxis transducer transmembrane protein  52.06 
 
 
535 aa  278  8e-74  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0710104  normal  0.94486 
 
 
-
 
NC_007348  Reut_B3731  methyl-accepting chemotaxis sensory transducer  58.94 
 
 
513 aa  266  2.9999999999999995e-70  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  51.95 
 
 
559 aa  266  2.9999999999999995e-70  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  53.25 
 
 
513 aa  265  8e-70  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4174  methyl-accepting chemotaxis sensory transducer  57.95 
 
 
522 aa  263  4e-69  Ralstonia pickettii 12J  Bacteria  normal  0.0753508  normal 
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  56.92 
 
 
572 aa  263  4e-69  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_012857  Rpic12D_4286  methyl-accepting chemotaxis sensory transducer  57.95 
 
 
522 aa  263  4e-69  Ralstonia pickettii 12D  Bacteria  normal  0.246906  normal  0.38481 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  65.02 
 
 
575 aa  261  1e-68  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  49.06 
 
 
586 aa  256  2e-67  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  51.62 
 
 
537 aa  257  2e-67  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  51.75 
 
 
569 aa  256  4e-67  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0557  methyl-accepting chemotaxis sensory transducer  60.17 
 
 
627 aa  256  5e-67  Burkholderia phytofirmans PsJN  Bacteria  normal  0.191348  normal  0.480006 
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  58.58 
 
 
587 aa  255  8e-67  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  61.54 
 
 
622 aa  254  1.0000000000000001e-66  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  64.16 
 
 
598 aa  254  2.0000000000000002e-66  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_010002  Daci_3266  methyl-accepting chemotaxis sensory transducer  62.08 
 
 
650 aa  253  4.0000000000000004e-66  Delftia acidovorans SPH-1  Bacteria  normal  0.50478  hitchhiker  0.0000385615 
 
 
-
 
NC_008752  Aave_2436  methyl-accepting chemotaxis sensory transducer  50.46 
 
 
539 aa  253  4.0000000000000004e-66  Acidovorax citrulli AAC00-1  Bacteria  normal  0.633872  normal 
 
 
-
 
NC_008752  Aave_2496  methyl-accepting chemotaxis sensory transducer  58.13 
 
 
537 aa  253  4.0000000000000004e-66  Acidovorax citrulli AAC00-1  Bacteria  decreased coverage  0.00000862286  decreased coverage  0.00394801 
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  51.59 
 
 
580 aa  252  5.000000000000001e-66  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  56.05 
 
 
584 aa  252  5.000000000000001e-66  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  58.33 
 
 
585 aa  253  5.000000000000001e-66  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  49.84 
 
 
552 aa  252  6e-66  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0687  methyl-accepting chemotaxis sensory transducer  57.44 
 
 
433 aa  252  6e-66  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  51.59 
 
 
578 aa  251  9.000000000000001e-66  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  56.05 
 
 
584 aa  251  1e-65  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS03153  putative methyl-accepting chemotaxis transducer transmembrane protein  62.28 
 
 
524 aa  250  2e-65  Ralstonia solanacearum GMI1000  Bacteria  normal  0.471775  normal  0.0817308 
 
 
-
 
NC_012880  Dd703_2474  methyl-accepting chemotaxis sensory transducer  56.91 
 
 
552 aa  250  2e-65  Dickeya dadantii Ech703  Bacteria  normal  0.356267  n/a   
 
 
-
 
NC_007650  BTH_II1955  methyl-accepting chemotaxis protein  67.12 
 
 
685 aa  251  2e-65  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  50.17 
 
 
583 aa  251  2e-65  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  49.35 
 
 
589 aa  250  2e-65  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  57.94 
 
 
549 aa  250  2e-65  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  54.94 
 
 
566 aa  251  2e-65  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_010681  Bphyt_2259  methyl-accepting chemotaxis sensory transducer  56.44 
 
 
588 aa  250  2e-65  Burkholderia phytofirmans PsJN  Bacteria  normal  0.131825  normal  0.497854 
 
 
-
 
NC_007951  Bxe_A4159  methyl-accepting chemotaxis sensory transducer  58.92 
 
 
611 aa  250  3e-65  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2526  methyl-accepting chemotaxis sensory transducer  58.44 
 
 
554 aa  248  1e-64  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2019  methyl-accepting chemotaxis sensory transducer  48.28 
 
 
567 aa  248  1e-64  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  59.43 
 
 
595 aa  248  1e-64  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_009078  BURPS1106A_A0627  methyl-accepting chemotaxis protein  66.22 
 
 
616 aa  247  2e-64  Burkholderia pseudomallei 1106a  Bacteria  normal  0.202062  n/a   
 
 
-
 
NC_009075  BURPS668_A0719  methyl-accepting chemotaxis protein  66.22 
 
 
616 aa  247  2e-64  Burkholderia pseudomallei 668  Bacteria  normal  0.152122  n/a   
 
 
-
 
NC_012791  Vapar_4183  methyl-accepting chemotaxis sensory transducer  60.83 
 
 
516 aa  247  2e-64  Variovorax paradoxus S110  Bacteria  normal  0.278563  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2013  methyl-accepting chemotaxis protein  66.22 
 
 
634 aa  247  2e-64  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1405  methyl-accepting chemotaxis sensory transducer  52.48 
 
 
548 aa  247  3e-64  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  58.8 
 
 
543 aa  246  4e-64  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II2191  methyl-accepting chemotaxis protein  56.25 
 
 
666 aa  246  4e-64  Burkholderia thailandensis E264  Bacteria  normal  0.918882  n/a   
 
 
-
 
NC_008784  BMASAVP1_0881  methyl-accepting chemotaxis protein  56.72 
 
 
661 aa  246  4.9999999999999997e-64  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0285  methyl-accepting chemotaxis protein  56.72 
 
 
563 aa  246  4.9999999999999997e-64  Burkholderia pseudomallei 1106a  Bacteria  normal  0.877776  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1733  methyl-accepting chemotaxis protein I  56.72 
 
 
661 aa  246  4.9999999999999997e-64  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0289  methyl-accepting chemotaxis sensory transducer  58.75 
 
 
598 aa  245  6e-64  Burkholderia phymatum STM815  Bacteria  normal  normal  0.759991 
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  56.33 
 
 
661 aa  246  6e-64  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0379  methyl-accepting chemotaxis protein  56.72 
 
 
542 aa  245  6e-64  Burkholderia pseudomallei 668  Bacteria  normal  0.366227  n/a   
 
 
-
 
NC_009079  BMA10247_A2146  methyl-accepting chemotaxis protein  56.72 
 
 
542 aa  245  8e-64  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1872  methyl-accepting chemotaxis protein  56.72 
 
 
542 aa  245  8e-64  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1169  methyl-accepting chemotaxis protein  56.72 
 
 
542 aa  245  8e-64  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0727  methyl-accepting chemotaxis sensory transducer  49.16 
 
 
559 aa  245  8e-64  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5597  methyl-accepting chemotaxis sensory transducer  56.18 
 
 
570 aa  245  9e-64  Ralstonia eutropha JMP134  Bacteria  normal  0.253624  n/a   
 
 
-
 
NC_007974  Rmet_3678  methyl-accepting chemotaxis sensory transducer  48.97 
 
 
605 aa  244  9.999999999999999e-64  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.12372 
 
 
-
 
NC_008752  Aave_0940  methyl-accepting chemotaxis sensory transducer  58.92 
 
 
546 aa  244  9.999999999999999e-64  Acidovorax citrulli AAC00-1  Bacteria  unclonable  0.000000958657  normal  0.647876 
 
 
-
 
NC_003296  RSp1406  methyl-accepting chemotaxis I  60.43 
 
 
608 aa  244  1.9999999999999999e-63  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.13211 
 
 
-
 
NC_007953  Bxe_C0847  methyl-accepting chemotaxis sensory transducer  53.21 
 
 
516 aa  244  1.9999999999999999e-63  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.024141 
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  49.48 
 
 
596 aa  243  3e-63  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_1600  methyl-accepting chemotaxis sensory transducer  48.17 
 
 
535 aa  243  3e-63  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4162  methyl-accepting chemotaxis sensory transducer  61.09 
 
 
615 aa  243  3.9999999999999997e-63  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_3464  methyl-accepting chemotaxis sensory transducer  51.89 
 
 
551 aa  243  3.9999999999999997e-63  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4050  methyl-accepting chemotaxis sensory transducer  61.09 
 
 
615 aa  243  3.9999999999999997e-63  Ralstonia pickettii 12J  Bacteria  normal  0.996584  normal 
 
 
-
 
NC_003295  RSc1460  methyl-accepting chemotaxis transducer transmembrane protein  54.94 
 
 
513 aa  242  5e-63  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.75608 
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  52.35 
 
 
527 aa  242  5e-63  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
NC_013421  Pecwa_2831  methyl-accepting chemotaxis sensory transducer  54.37 
 
 
554 aa  242  6e-63  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
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