| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0687 |
|---|
| Symbol | |
|---|
| ID | 7974650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 747748 |
|---|
| End bp | 749049 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644791286 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_002942607 |
|---|
| Protein GI | 239813697 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAATT GGAAGATCAG TGCCCAGCTG GGCGCGGCGT TCGGGATCGT GTTGCTGTTG
ATGGCGACGG GGCTCGCGAT CGGCATCGCG GGCCTTCAGG AGGTCGCCGG CAGCGGCGTC
GCCCCGGAGC TCGCACGGCA TATCGCGTCG ACGCGCAACC TCATGGCGGG CTTCGGGGTC
GCCGCGCTGC TGGCGGGCGT GGGCTGCAGC GTCTGGCTCG CGCGCAGCAT CATGCAGCCG
CTTGGCGAGG CGATCTTCAT CGCGGAGACC GTGGCCTCGG GCGACCTCAG CAAGGAATTC
GAGACCGAGC GCGGCGGTGA TTTCGGGCGG CTGCTGCGCG GCATGGGCGA AATGGAGGAC
ACGCTGACGG ACGTGGTGAC GCGCATCAAG GCATCGACCG ACTCGATCGT GGTGGCGTCC
GGGCAGATCG CGGCCGGCAA CCAGGAGCTG TCCTCGCGCA CAGAAGAGCA GGCCAGCTCG
CTCGAGCAGA CCGCGGCCTC GATGGAAGAG CTCACGAGCA CCGTCAAGCA GAACGCCGAC
AACGCGCGGC AGGCCAACCA GCTGGCGCTC TCGGCCTCCG AAGTGGCCGT GAAGGGCGGC
AGCGTGGTGG GGCAGGTTGT CGACACCATG GCGTCGATCA ATGCTTCTTC CCGGAAGATC
GTCGACATCA TCGGCGTGAT CGACGGCATC GCGTTCCAGA CCAACATCCT GGCGCTCAAT
GCGGCTGTCG AAGCCGCGCG CGCGGGCGAG CAGGGCCGCG GCTTTGCGGT GGTCGCGTCG
GAAGTGAGAA GCCTCGCACA GCGCTCGGCC GCGGCGGCCA AGGAGATCAA GGGCCTGATC
GACGATTCGG TGGGCAAGGT CGACGTGGGC AGTGCACTCG TCGGCGAGGC CGGCAAGACG
ATGGAAGAGA TCGTGAGCGG CGTCAAGCGC GTGACGGACA TCATCGGCGA GATCACCGCG
GCCAGCCACG AGCAGGCGCA GGGCATCGAG CAGGTGAACC AGGCGATCGC GCAGATGGAC
CAGGTGACGC AGCAGAACGC GGCGCTGGTC GAGGAGGCGG CCGCCGCGGC CCAGTCGCTG
CAGGAACAGG CCGACAGCCT CTCGCAGGTG GTGGCCACCT TCAAGCTCGA CGACGACGAA
GAGGAACCCG CCGCGGCGCC GCCCAGGCCC GCACCCGTCC AGGCGCGTGT CGAGCAGCCG
GTCCAGCCGG CTCGGCGTGC ACTTGCCGCT GCACCGCCGC GCAAGCCAGT GGCGGCCATC
GCGGGCACGT CCGCCGCCAG CGGAGACTGG GAGACTTTCT AA
|
|---|
| Protein sequence | MRNWKISAQL GAAFGIVLLL MATGLAIGIA GLQEVAGSGV APELARHIAS TRNLMAGFGV
AALLAGVGCS VWLARSIMQP LGEAIFIAET VASGDLSKEF ETERGGDFGR LLRGMGEMED
TLTDVVTRIK ASTDSIVVAS GQIAAGNQEL SSRTEEQASS LEQTAASMEE LTSTVKQNAD
NARQANQLAL SASEVAVKGG SVVGQVVDTM ASINASSRKI VDIIGVIDGI AFQTNILALN
AAVEAARAGE QGRGFAVVAS EVRSLAQRSA AAAKEIKGLI DDSVGKVDVG SALVGEAGKT
MEEIVSGVKR VTDIIGEITA ASHEQAQGIE QVNQAIAQMD QVTQQNAALV EEAAAAAQSL
QEQADSLSQV VATFKLDDDE EEPAAAPPRP APVQARVEQP VQPARRALAA APPRKPVAAI
AGTSAASGDW ETF
|
|---|
| |